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Protein Alignment CAH7 and Ca4

DIOPT Version :9

Sequence 1:	NP_001287267.1	Gene:	CAH7 / 41238	FlyBaseID:	FBgn0037788	Length:	304	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	311	Identity:	93/311 - (29%)
Similarity:	153/311 - (49%)	Gaps:	36/311 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly     3 LIALSLIVCCSVSFSWANEWGYPDLDNNQDEPFPKWGGLCDSGKKQSPINLHV-KGALKGEFDAL 66
            |:||:.:...:....|..|....:.:::...| .:|.|.|.. .:|||||:.. |..|.......
  Rat     7 LLALAYVAPSTEDSHWCYEIQAKEPNSHCSGP-EQWTGDCKK-NQQSPINIVTSKTKLNPSLTPF 69

  Fly    67 KFENYDEHQKNLRMVNNGHSIQLSGFDHELTLSGGALLQDFVVEQIHMHW------WSEHTINDI 125
            .|..||: :|...:.||.||:::| ...::.:.||.|...:...|:|:||      .|||:|:..
  Rat    70 TFVGYDQ-KKKWEVKNNQHSVEMS-LGEDIYIFGGDLPTQYKAIQLHLHWSEESNKGSEHSIDGK 132

  Fly   126 RYPLEVHIVHRNTIYPNMTMAANFKDGIVVIGVLYHVSNTPNEAIGSIIKSLGAVKSYDSMNKPV 190
            .:.:|:|:||:.....:....::.||.|.|:..:..|.|..||....::::|      ..::||.
  Rat   133 HFAMEMHVVHKKMTTGDKVQDSDSKDKIAVLAFMVEVGNEVNEGFQPLVEAL------SRLSKPF 191

  Fly   191 ---LVADSLAVDDLVP---SVENYFTYAGSLTTPTCAEAVTWIVLTETFPVTLDQVNEF-KEIEY 248
               .|::| .:.|::|   .:..||.|.||||||.|.|.|.|.|..|...:..||..|| |::.|
  Rat   192 TNSTVSES-CLQDMLPEKKKLSAYFRYQGSLTTPGCDETVIWTVFEEPIKIHKDQFLEFSKKLYY 255

  Fly   249 DEGKQLH--NNYRELQSENNRAVVLVEQPEQRSGSAGLTASVSLGLMTLIL 297
            |:.::|:  :|.|.||...||.|.       ||.::|  ..:||.|.||::
  Rat   256 DQEQKLNMKDNVRPLQPLGNRQVF-------RSHASG--RLLSLPLPTLLV 297

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.