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Protein Alignment CAH7 and Car5a

DIOPT Version :9

Sequence 1:	NP_001287267.1	Gene:	CAH7 / 41238	FlyBaseID:	FBgn0037788	Length:	304	Species:	Drosophila melanogaster
Sequence 2:	NP_031634.2	Gene:	Car5a / 12352	MGIID:	101946	Length:	299	Species:	Mus musculus

Alignment Length:	258	Identity:	81/258 - (31%)
Similarity:	124/258 - (48%)	Gaps:	43/258 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly    36 PKWGGLCDS--GKKQSPINLHVKGALKGEFDALKFENYDEHQKNLR----------MVNNGHSIQ 88
            |.|.|...|  |.:|||||:..|.::           ||.....||          :.|.|:..|
Mouse    44 PLWTGPVSSAEGTRQSPINIQWKDSV-----------YDPQLAPLRVSYDAASCRYLWNTGYFFQ 97

  Fly    89 LSGFD---HELTLSGGALLQDFVVEQIHMHW-----W-SEHTINDIRYPLEVHIVHRN-TIYPNM 143
            :. ||   .:..:|||.|...:.::|.|.||     | |||.::...||.|:|:||.| |.|.|.
Mouse    98 VE-FDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENY 161

  Fly   144 TMAANFKDGIVVIGVLYHVSNTPNEAIGSIIKSLGAVKSYDSMNKPVLVADSLAVDDLVPSVENY 208
            ..|:..::|:.||||...: ...::|:..::..|..|:..|:.    :.........|:|:..:|
Mouse   162 KKASVGENGLAVIGVFLKL-GAHHQALQKLVDVLPEVRHKDTQ----VAMGPFDPSCLLPACRDY 221

  Fly   209 FTYAGSLTTPTCAEAVTWIVLTETFPVTLDQVNEFKEIEY----DEGKQLHNNYRELQSENNR 267
            :||.||||||..||:|||||......|:..|::.|:.:.:    :|...:.||||.||...:|
Mouse   222 WTYPGSLTTPPLAESVTWIVQKTPVEVSPSQLSTFRTLLFSGRGEEEDVMVNNYRPLQPLRDR 284

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.