DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nerfin-2 and Insm2

DIOPT Version :9

Sequence 1:NP_001262446.1 Gene:nerfin-2 / 41235 FlyBaseID:FBgn0041105 Length:775 Species:Drosophila melanogaster
Sequence 2:XP_006240173.1 Gene:Insm2 / 314131 RGDID:1306949 Length:495 Species:Rattus norvegicus


Alignment Length:441 Identity:120/441 - (27%)
Similarity:169/441 - (38%) Gaps:142/441 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   343 ATAEIRTTSSDNLPPPPPPPPPPATSTIPATPPLP-PPPISRPHKAERR----------RSKLRK 396
            :.|....||.:.|.||          .:|.:.|:| |..:..||..:||          .:.:||
  Rat   106 SAAPAAATSGEQLVPP----------RVPVSVPVPVPVSVPAPHGLQRRGKGAPGCPSAPAAVRK 160

  Fly   397 HMAI------DEETISPVSGTIIRKLRDDEELVVRKGDIDPAFNVVEITEEAKAILASIDNKIGD 455
            ..|:      ||.|.|||.|.   |::::|          |.       ..|:| |..:...:|:
  Rat   161 PKAVRRLSFADEVTTSPVLGL---KIKEEE----------PG-------APARA-LGGVRTPLGE 204

  Fly   456 YMCQLCRTVYDDAFMLAQHRCPRIVHIEYKCSECEKVFNCPANLASHRRWHKPK----------- 509
            ::||||:..|.|.|.||||||.|||.:||:|.||:|||:||||||||||||||:           
  Rat   205 FICQLCKQQYADPFALAQHRCSRIVRVEYRCPECDKVFSCPANLASHRRWHKPRPTPACTASKPP 269

  Fly   510 -AEAAGVNPAKKRVVETGDL-------VQEATRSGD----------------------------- 537
             |.....:|:.....|.|.|       .|....|||                             
  Rat   270 HAPLTPPDPSLAAGKENGCLPRTEDQHPQARDSSGDGQHRDSAALPGLQALVHPEAARPQAPYSE 334

  Fly   538 -----------DASDG----IYPCHICGKTFRRQAYLKKHQASHQMLDNLKNLDFFKSQQ-QQLT 586
                       .||.|    ::.|..|.|.|||||||:||..:|:..........|.|:: ..||
  Rat   335 VILGRHGPRPSGASTGATSEVFVCPYCHKKFRRQAYLRKHLGTHETGSARATTPGFGSERTAPLT 399

  Fly   587 I-----NGHQLADHVQLQHTTGQAVTSAAPYASLPRPPPGMPMYPPPSGKNYPGGQRFPGFPFQS 646
            .     ..|..:..::.:|....||.......:|    .|.|....|.|.:....|       |.
  Rat   400 FACPLCGAHFPSADIREKHRLWHAVREELLLPAL----VGAPTEAGPGGASEGSAQ-------QI 453

  Fly   647 FDQRRFYSLGEFYLSQHLERSSAFQYVQANHLRQL--SNVAQTLMPPLPVK 695
            |..:  |....|:.|..|.|          |:.:.  |...|.|:..:|::
  Rat   454 FSCK--YCPSTFFSSPGLTR----------HINKCHPSESRQVLLLQMPLR 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nerfin-2NP_001262446.1 C2H2 Zn finger 458..481 CDD:275368 15/22 (68%)
C2H2 Zn finger 486..506 CDD:275368 16/19 (84%)
zf-C2H2 544..566 CDD:278523 12/21 (57%)
C2H2 Zn finger 546..566 CDD:275368 12/19 (63%)
Insm2XP_006240173.1 C2H2 Zn finger 207..227 CDD:275368 13/19 (68%)
C2H2 Zn finger 235..255 CDD:275368 16/19 (84%)
zf-C2H2 356..378 CDD:278523 12/21 (57%)
C2H2 Zn finger 358..378 CDD:275368 12/19 (63%)
C2H2 Zn finger 402..422 CDD:275368 2/19 (11%)
C2H2 Zn finger 456..477 CDD:275368 6/32 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3993
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002683
OrthoInspector 1 1.000 - - otm44559
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15065
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1791
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.870

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