DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nerfin-2 and ham-2

DIOPT Version :9

Sequence 1:NP_001262446.1 Gene:nerfin-2 / 41235 FlyBaseID:FBgn0041105 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_001024364.2 Gene:ham-2 / 180727 WormBaseID:WBGene00001821 Length:392 Species:Caenorhabditis elegans


Alignment Length:384 Identity:82/384 - (21%)
Similarity:139/384 - (36%) Gaps:85/384 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QSHLQSVQHLGQHQPLPA--LLQGHPDTTHFVE----CRALPAINETFP-QFGQHRPAISLL--- 79
            |:|.:|......:..:|:  .|:.|....|.:.    ||   ..|..|| :...|....|:|   
 Worm    37 QAHFKSYTCTTCNNEIPSNDTLRSHMYRVHNITRMFMCR---CCNWAFPDKTSLHIHMQSMLKNG 98

  Fly    80 SPLDLSLRAAAS-VVPITPPS-TP--SPPRKRQRLMSEENYLWRPHMASPAAPAPVV---PSSLA 137
            :|.:.::.|.:| ||..|..| :|  |||.....||.:.......:..:..:..|.:   |.|.:
 Worm    99 TPGEAAVLAKSSDVVDSTSESGSPRQSPPFSPDLLMQKRMLQVAANNNNIGSIFPTLLKSPDSKS 163

  Fly   138 MQPGYFHHHQQQQHQLPHQQHHQPYATRSSLEGASFNKSHFHGTKNNFEQIPAGQSSVSSPIYVE 202
            |.|       .....:...|....:...:.:..|:.|.:        .:|.|:..|..||.|...
 Worm   164 MFP-------LDLSNMGPSQFLSAWLANNPINTAALNLA--------AQQTPSKDSIQSSNISDY 213

  Fly   203 DETIVLTEDED-ETVVSSHDYN--EYATDTEEVNEGDDETQQVQVSVNGDDDEEEVFVDVLGSDD 264
            |:..|.|.:|| :..|.|.|.:  .....||...:.:.| ....:.|.|||.|..:.:.:   ||
 Worm   214 DDLEVQTTEEDIKFEVESSDVSPRSVIVKTEPTFKRELE-HDADIDVEGDDGEPPLKMTI---DD 274

  Fly   265 -----DEDEATDLVATRLQAQLIETTALKRNELL--YEDEELHNQ--AVNGLARLFDRDFPEPDV 320
                 ..|:.:..|:   .:.:...::....|.|  ::.:....:  ||....|.:::...|..|
 Worm   275 KNIHISHDQPSPTVS---DSHISGGSSSHSGESLKCFDCQVARGKLVAVEDKCRAYEKTIRELQV 336

  Fly   321 EVSGLAELQSNSGKTYTDLSGVATAEIRTTSSDNLPPPPPPPPPPATSTIPATPPLPPP 379
            :|..|.::|.|                        |.||...|||..       |:|.|
 Worm   337 QVDFLRKIQPN------------------------PMPPVMLPPPMM-------PMPSP 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nerfin-2NP_001262446.1 C2H2 Zn finger 458..481 CDD:275368
C2H2 Zn finger 486..506 CDD:275368
zf-C2H2 544..566 CDD:278523
C2H2 Zn finger 546..566 CDD:275368
ham-2NP_001024364.2 zf-C2H2 16..39 CDD:395048 1/1 (100%)
C2H2 Zn finger 18..39 CDD:275368 1/1 (100%)
C2H2 Zn finger 45..66 CDD:275368 3/20 (15%)
C2H2 Zn finger 74..91 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8156
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

Return to query results.
Submit another query.