DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3909 and VIP3

DIOPT Version :9

Sequence 1:NP_649969.1 Gene:CG3909 / 41226 FlyBaseID:FBgn0027524 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_194712.1 Gene:VIP3 / 829105 AraportID:AT4G29830 Length:321 Species:Arabidopsis thaliana


Alignment Length:340 Identity:120/340 - (35%)
Similarity:182/340 - (53%) Gaps:56/340 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ENAHDSQLWACTWGRDTAASDPDDAVVEPEENPFDFDKKEARPKDFLVTGGLDDLVKVW-----D 68
            ||||:..:||.||            |...|:.|           ..|:||.||:.||:|     |
plant    10 ENAHEDSVWAATW------------VPATEDRP-----------ALLLTGSLDETVKLWRPDELD 51

  Fly    69 LQEDNTLKLRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWDARSGDKKHLLSFGPVDLWTV 133
            |...||        ||:|||.::|....|...||||:||.:.::|..:.....:|...|.::|.:
plant    52 LVRTNT--------GHSLGVAALAAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEVWGM 108

  Fly   134 QFSPCNKYV-ISGLNDGKISMYSVETGKAEQTL-----DA-------QNGKYTLSIAYSPDGKYI 185
            ||.|....: ::|.:...:.::...:.:...||     ||       .:.|:.||:|:||:||.:
plant   109 QFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKFVLSVAWSPNGKRL 173

  Fly   186 ASGAIDGIITIFDVAAGKVVQTLEGHAMPVRSLCFSP-NSQLLLTASDDGHMKLYDVTHSDVVGT 249
            |.|::||.|.:|||...|::..||||.||||||.||| :.::|.:.|||||:.::|.....::|:
plant   174 ACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGS 238

  Fly   250 LSGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSERKCLHTFAEHTDQVWGVRYSPGN------ 308
            :|||.||||.|..|.||...|:.|||.:|::||...|..:.|.:.|.||||.|.:.|..      
plant   239 MSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTGVRA 303

  Fly   309 DKVASASEDKSLNIY 323
            .::||.|:|||:::|
plant   304 GRLASVSDDKSVSLY 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3909NP_649969.1 WD40 52..323 CDD:238121 108/295 (37%)
WD40 <54..326 CDD:225201 109/295 (37%)
WD40 repeat 89..127 CDD:293791 10/37 (27%)
WD40 repeat 130..166 CDD:293791 7/41 (17%)
WD40 repeat 174..209 CDD:293791 16/34 (47%)
WD40 repeat 215..251 CDD:293791 15/36 (42%)
WD40 repeat 257..293 CDD:293791 15/35 (43%)
WD40 repeat 299..323 CDD:293791 10/29 (34%)
VIP3NP_194712.1 WD40 13..319 CDD:238121 117/337 (35%)
WD40 repeat 17..58 CDD:293791 19/71 (27%)
WD40 repeat 64..102 CDD:293791 10/37 (27%)
WD40 repeat 105..142 CDD:293791 6/36 (17%)
WD40 repeat 162..197 CDD:293791 16/34 (47%)
WD40 repeat 203..240 CDD:293791 15/36 (42%)
WD40 repeat 246..282 CDD:293791 15/35 (43%)
WD40 repeat 288..318 CDD:293791 10/29 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5884
Inparanoid 1 1.050 200 1.000 Inparanoid score I1320
OMA 1 1.010 - - QHG53955
OrthoDB 1 1.010 - - D1052423at2759
OrthoFinder 1 1.000 - - FOG0006473
OrthoInspector 1 1.000 - - oto3428
orthoMCL 1 0.900 - - OOG6_103719
Panther 1 1.100 - - LDO PTHR44090
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4723
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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