DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3909 and Wdsub1

DIOPT Version :10

Sequence 1:NP_649969.1 Gene:CG3909 / 41226 FlyBaseID:FBgn0027524 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_001366327.1 Gene:Wdsub1 / 72137 MGIID:1919387 Length:475 Species:Mus musculus


Alignment Length:291 Identity:90/291 - (30%)
Similarity:138/291 - (47%) Gaps:30/291 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LVTGGLDDLVKVWDLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWDARSGDK 119
            |.|..||..::::.|.:...|.. ..||.|...|.....|..|..:||.|.|.|..||.:.||  
Mouse    25 LATCSLDKTIRLYSLSDFAELPY-SPLKFHTYAVHCCCFSPSGHVLASCSTDGTTVLWSSHSG-- 86

  Fly   120 KHLLSF------GPVDLWTVQFSPCNKYVISGLNDGKISMYSVETGKAEQTLDAQNGKYTLSIAY 178
             |.|:.      .||.:..  |||.:.|:.||..||.|::::.:|.|..:....::.. .::.|:
Mouse    87 -HTLTVLEQPGGSPVRVCC--FSPDSAYLASGAADGSIALWNAQTYKLYRCGSVKDSS-LVACAF 147

  Fly   179 SPDGKYIASGAIDGIITIFDVAAGKVVQTLEGHAMPVRSLCFSP---------NSQLLLTASDDG 234
            ||||....:|:..|.:|::|... :.:.:.:.|.:.:....||.         .|..|.:...|.
Mouse   148 SPDGGLFVTGSSGGDLTVWDDRM-RCLHSEKAHDLGITCCSFSSQPLSGGEGLQSYQLASCGQDC 211

  Fly   235 HMKLYDVTHSDVVG-------TLSGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSERKCLHTF 292
            .:||:.||.:.|:|       |||||.:.||..|||.|||..||.|.|.||.|.....:..|||.
Mouse   212 EIKLWAVTITRVLGFELKYKSTLSGHCAPVLACAFSHDGKMLASGSVDKSVIIHGIGPQSVLHTL 276

  Fly   293 AEHTDQVWGVRYSPGNDKVASASEDKSLNIY 323
            .:||..|....::|....:|:.|.||::||:
Mouse   277 TQHTRYVTTCAFAPNTLLLATGSMDKTVNIW 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3909NP_649969.1 WD40 <54..323 CDD:441893 89/289 (31%)
WD40 repeat 89..127 CDD:293791 13/43 (30%)
WD40 repeat 130..166 CDD:293791 11/35 (31%)
WD40 repeat 174..209 CDD:293791 9/34 (26%)
WD40 repeat 215..251 CDD:293791 12/51 (24%)
WD40 repeat 257..293 CDD:293791 18/35 (51%)
WD40 repeat 299..323 CDD:293791 7/23 (30%)
Wdsub1NP_001366327.1 WD40 <3..310 CDD:441893 90/291 (31%)
WD 1 10..47 6/21 (29%)
WD40 repeat 16..52 CDD:293791 7/27 (26%)
WD 2 52..91 15/41 (37%)
WD40 repeat 57..93 CDD:293791 14/38 (37%)
WD 3 95..134 13/40 (33%)
WD40 repeat 101..136 CDD:293791 11/36 (31%)
WD 4 137..176 9/40 (23%)
WD40 repeat 143..177 CDD:293791 9/34 (26%)
WD 5 178..227 12/48 (25%)
WD40 repeat 183..235 CDD:293791 12/51 (24%)
WD 6 236..275 18/38 (47%)
WD40 repeat 241..264 CDD:293791 14/22 (64%)
WD40 repeat 283..307 CDD:293791 7/23 (30%)
SAM_WDSUB1 327..398 CDD:188904
U-box 403..475 CDD:398320
Blue background indicates that the domain is not in the aligned region.

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