DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3909 and rig

DIOPT Version :9

Sequence 1:NP_649969.1 Gene:CG3909 / 41226 FlyBaseID:FBgn0027524 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster


Alignment Length:346 Identity:75/346 - (21%)
Similarity:134/346 - (38%) Gaps:77/346 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 DFDKKEAR---PKDFLVTGGLDDLVK---------VWDLQEDNTLKLRHKLKGH--------ALG 87
            :|::|..|   .||...:..|.|:|.         :|..:.:..:.:.:...|.        |.|
  Fly   505 EFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFG 569

  Fly    88 VVSVAVSSDGQT-IASSSLDSTMCLWDARSGDKKHLLSFGPVD-------LWTVQFSPCNKYVIS 144
            |.::|...|... ||....|..:..:|.    .|...|..|:|       ::.:.:||....:..
  Fly   570 VRAMAECPDDMNKIALGCSDRRVAFFDI----SKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAF 630

  Fly   145 GLNDGKISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVAAGKVVQTLE 209
            |..||.:.:..||..|.:..|...:.|...|:.:.....|.   .::.::..||:...|:..|:.
  Fly   631 GTFDGTVGILDVERMKVKTHLRTPHKKEVYSLVWQDHFIYF---IVNRVLGFFDLRKSKIEPTIV 692

  Fly   210 GHAMPVRSLCFSPNSQL------LLTASDDGHMKLY------DVTHSDVVGTLSGHASWVLCVAF 262
            .        |.|..|.|      |...:|||.::::      :.:.|..:...:..|.:|..:|:
  Fly   693 N--------CISRPSYLSIRDSFLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFARYVTDIAW 749

  Fly   263 SE-DGKHFASSSSDNSVKI--WDTSER--KCLHTFAEHTDQ--VWGVRYSPGNDKV--------- 311
            .. |...||.|.:|.||.:  :..:||  |.||||..:|::  :..:|:|.....:         
  Fly   750 CPLDSNKFAVSGNDRSVYVMEFQPTERNWKTLHTFTANTEKASITSMRWSHTQKHLLLTFHIEGK 814

  Fly   312 -----ASASEDKSLNI-YYCP 326
                 .:|.|...|.| |:||
  Fly   815 VCLWNCNAPEKPPLTITYHCP 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3909NP_649969.1 WD40 52..323 CDD:238121 69/329 (21%)
WD40 <54..326 CDD:225201 68/330 (21%)
WD40 repeat 89..127 CDD:293791 8/38 (21%)
WD40 repeat 130..166 CDD:293791 8/35 (23%)
WD40 repeat 174..209 CDD:293791 6/34 (18%)
WD40 repeat 215..251 CDD:293791 9/47 (19%)
WD40 repeat 257..293 CDD:293791 15/40 (38%)
WD40 repeat 299..323 CDD:293791 6/38 (16%)
rigNP_611499.3 WD40 <80..>215 CDD:295369
WD40 80..>215 CDD:225201
WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 434..821 CDD:225201 68/330 (21%)
WD40 446..719 CDD:295369 47/228 (21%)
WD40 613..874 CDD:295369 52/234 (22%)
WD40 repeat 617..654 CDD:293791 9/36 (25%)
WD40 repeat 659..691 CDD:293791 5/34 (15%)
WD40 repeat 693..732 CDD:293791 8/46 (17%)
WD40 repeat 744..785 CDD:293791 15/40 (38%)
WD40 repeat 793..831 CDD:293791 5/37 (14%)
WD40 repeat 838..861 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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