DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3909 and CG30116

DIOPT Version :9

Sequence 1:NP_649969.1 Gene:CG3909 / 41226 FlyBaseID:FBgn0027524 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster


Alignment Length:451 Identity:88/451 - (19%)
Similarity:153/451 - (33%) Gaps:181/451 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 DFLVTGGLDDLVKVWDLQ------------------------------EDNTLKLR--------H 79
            |.|::||||..:.||||.                              |||.|.:|        |
  Fly  1039 DVLISGGLDRTICVWDLDNFTLLNTMQMTSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELH 1103

  Fly    80 KLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWDARSGDKKHLLSFGPVDLWTVQFSPCNKYVIS 144
            .||||...:.|:::..|.|.......|:...::|..:|.....|...|..:..|.....:.::::
  Fly  1104 TLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHAGKLVRSLPPNPGPVTAVHAMDNDDFLVT 1168

  Fly   145 GLNDGKISMYS----------------------------------------VETGKAEQTLDAQN 169
             :...||:.||                                        .:..:..|.:...:
  Fly  1169 -VGGNKITFYSFRNEELYVNPYSRHPRRKRSLKRHAQAQRSPSTTLPPITCFDLSRDSQQMAIAS 1232

  Fly   170 GKY-------------TLS--------IAYSPDGKYIASGAIDGIITIFDVAAGKVVQTLEGHAM 213
            |::             ||.        :.::|:|:::|:|:.|.::.|:::|.|::..:.:||..
  Fly  1233 GRHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFKGHTA 1297

  Fly   214 PV---------------------------------------RSLCFSPNSQLLLTASDDGHMKL- 238
            ||                                       :||..:.|.:..::.:.|..:|: 
  Fly  1298 PVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYKSLSVTNNMRFAVSTNGDNTLKIW 1362

  Fly   239 --------YDVTHSDVV----------------------------GTLS----GHASWVLCVAFS 263
                    |.|:|||.:                            |.||    ||:..|.|||.|
  Fly  1363 SLTQEDEKYSVSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVS 1427

  Fly   264 EDGK-HFASSSSDNSVKIWDTSERKCLHTFAEHTDQVWGVRYSPGNDKVASASEDKSLNIY 323
            ...| ...|.|.|.::.:||....:.:||.|.|...|.||:.|.......|.|:||:|.::
  Fly  1428 VTNKTQVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVW 1488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3909NP_649969.1 WD40 52..323 CDD:238121 88/449 (20%)
WD40 <54..326 CDD:225201 87/450 (19%)
WD40 repeat 89..127 CDD:293791 7/37 (19%)
WD40 repeat 130..166 CDD:293791 6/75 (8%)
WD40 repeat 174..209 CDD:293791 9/42 (21%)
WD40 repeat 215..251 CDD:293791 12/111 (11%)
WD40 repeat 257..293 CDD:293791 13/36 (36%)
WD40 repeat 299..323 CDD:293791 9/23 (39%)
CG30116NP_725799.1 AAA_16 359..505 CDD:289934
WD40 repeat 901..937 CDD:293791
WD40 933..1282 CDD:238121 43/243 (18%)
WD40 repeat 942..982 CDD:293791
WD40 repeat 988..1024 CDD:293791
WD40 1022..1484 CDD:225201 86/445 (19%)
WD40 repeat 1029..1064 CDD:293791 10/24 (42%)
WD40 repeat 1071..1106 CDD:293791 6/34 (18%)
WD40 repeat 1112..1147 CDD:293791 6/34 (18%)
WD40 repeat 1216..1252 CDD:293791 4/35 (11%)
WD40 1248..1502 CDD:238121 53/241 (22%)
WD40 repeat 1258..1294 CDD:293791 8/35 (23%)
WD40 repeat 1299..1335 CDD:293791 1/35 (3%)
WD40 repeat 1340..1374 CDD:293791 6/33 (18%)
WD40 repeat 1379..1415 CDD:293791 3/35 (9%)
WD40 repeat 1421..1458 CDD:293791 13/36 (36%)
WD40 repeat 1464..1488 CDD:293791 9/23 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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