DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3909 and APAF1

DIOPT Version :9

Sequence 1:NP_649969.1 Gene:CG3909 / 41226 FlyBaseID:FBgn0027524 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_863651.1 Gene:APAF1 / 317 HGNCID:576 Length:1248 Species:Homo sapiens


Alignment Length:296 Identity:72/296 - (24%)
Similarity:122/296 - (41%) Gaps:52/296 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 EENAHDSQLWACTWGRD-----TAASDPD----DAVVEPEENPFDFDKKEARPKDF--------L 55
            |..||:.::..|.:..|     |.:.|..    :::.....:.:|...::.....|        |
Human   652 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 716

  Fly    56 VTGGLDDLVKVWDLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWDARSGDKK 120
            .||..|..:|:|||   |..:.|:.:.||...|.....|.|.:.:||.|.|.|:.||||.|.:::
Human   717 ATGSSDCFLKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANER 778

  Fly   121 HLLSFGPVDLWTVQFSPCNKYVISGLNDGKISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYI 185
            ..::.              |.....|.|.:..|..:                ....::|.||..|
Human   779 KSINV--------------KQFFLNLEDPQEDMEVI----------------VKCCSWSADGARI 813

  Fly   186 ASGAIDGIITIFDV-AAGKVVQTLEGHAMPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSDVVGT 249
            ...|.:.|. :||: .:|.:.:...||...::...|||.:.|.:.|.....::|::......|..
Human   814 MVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVAD 877

  Fly   250 LSGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSE 285
            ..||.|||..|.||.||..|.:||.|.::::|:|.:
Human   878 CRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3909NP_649969.1 WD40 52..323 CDD:238121 64/243 (26%)
WD40 <54..326 CDD:225201 64/241 (27%)
WD40 repeat 89..127 CDD:293791 12/37 (32%)
WD40 repeat 130..166 CDD:293791 4/35 (11%)
WD40 repeat 174..209 CDD:293791 9/35 (26%)
WD40 repeat 215..251 CDD:293791 7/35 (20%)
WD40 repeat 257..293 CDD:293791 12/29 (41%)
WD40 repeat 299..323 CDD:293791
APAF1NP_863651.1 CARD_APAF1 7..92 CDD:260034
NB-ARC 129..374 CDD:395745
APAF1_C 453..587 CDD:407760
WD40 607..910 CDD:238121 70/291 (24%)
WD 1-1 613..652 72/296 (24%)
WD40 repeat 623..655 CDD:293791 1/2 (50%)
WD 1-2 655..694 6/38 (16%)
WD40 repeat 660..697 CDD:293791 4/36 (11%)
WD 1-3 697..738 11/43 (26%)
WD40 repeat 703..741 CDD:293791 11/40 (28%)
WD 1-4 741..780 15/38 (39%)
WD40 repeat 746..791 CDD:293791 14/58 (24%)
WD 1-5 796..836 10/56 (18%)
WD40 repeat 802..870 CDD:293791 17/68 (25%)
WD 1-6 838..877 9/38 (24%)
WD 1-7 880..910 14/29 (48%)
WD40 repeat 885..939 CDD:293791 12/29 (41%)
Interpropeller linker. /evidence=ECO:0000250 910..921 1/4 (25%)
WD 2-1 922..958
WD 2-2 959..998
WD40 961..1234 CDD:238121
WD40 repeat 964..990 CDD:293791
WD 2-3 1001..1040
WD40 repeat 1006..1030 CDD:293791
WD 2-4 1042..1080
WD40 repeat 1047..1082 CDD:293791
WD 2-5 1083..1122
WD40 repeat 1089..1124 CDD:293791
WD 2-6 1125..1164
WD40 repeat 1130..1172 CDD:293791
WD 2-7 1175..1212
WD40 repeat 1180..1213 CDD:293791
WD 2-8 1213..1248
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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