DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3909 and tep1

DIOPT Version :9

Sequence 1:NP_649969.1 Gene:CG3909 / 41226 FlyBaseID:FBgn0027524 Length:331 Species:Drosophila melanogaster
Sequence 2:XP_012825586.2 Gene:tep1 / 100485265 XenbaseID:XB-GENE-495387 Length:2663 Species:Xenopus tropicalis


Alignment Length:315 Identity:74/315 - (23%)
Similarity:135/315 - (42%) Gaps:51/315 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 DFLVTGGLDDLVKVWDLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWDARSG 117
            |.|..|..|.::::|.:.:...:   |:.:.|...:....||.|.:.:.:.|||..:.||:...|
 Frog  1852 DLLCVGSYDGILEIWKISDGCRM---HRAEAHRRQITGCCVSPDQRQLITCSLDYQLKLWETSRG 1913

  Fly   118 D------------------KKHLLSFGP---------VDLW-------------TVQFSPCNKYV 142
            .                  :.|:::.|.         ::.|             .|.||...|::
 Frog  1914 SLLGSISFPYPLACTTFHPRGHVVAVGSWDGKITVLRLENWEKTAVLCGSSSVRAVSFSQDGKWL 1978

  Fly   143 ISGLNDGKISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVAAGKVVQT 207
            |||..||.:|:::.|.........|.:|. ||:.::...|||:.:|..|..:.::....|:::..
 Frog  1979 ISGSLDGWVSLWAWEAQVQLSHFKAHSGS-TLTCSFLQQGKYLLTGGEDSKVQVWSGGLGRLLGR 2042

  Fly   208 LEGHA--MPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSDVVGTLSGHASWVLCVAFSEDGKHFA 270
            ::|..  ....||..||:.|||......|.:.:|.|...|:|...|.....:||||:..: :...
 Frog  2043 VDGEIKNSSAISLAVSPSRQLLAVGYHTGTVSVYSVDLGDLVAQTSIEDVTILCVAWLSE-EVLV 2106

  Fly   271 SSSSDNSVKIWDTSERK--CLHTFAEHTDQVWGVRYSPGNDKVASASEDKSLNIY 323
            :.:||:.|::|..|..:  |.....||...|..:..|  :..:||||.|.|:.::
 Frog  2107 TGTSDSLVRVWKISSGQFTCQLMLKEHQRFVQALAVS--SKLLASASGDVSVCLW 2159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3909NP_649969.1 WD40 52..323 CDD:238121 74/313 (24%)
WD40 <54..326 CDD:225201 73/314 (23%)
WD40 repeat 89..127 CDD:293791 10/55 (18%)
WD40 repeat 130..166 CDD:293791 12/48 (25%)
WD40 repeat 174..209 CDD:293791 7/34 (21%)
WD40 repeat 215..251 CDD:293791 12/35 (34%)
WD40 repeat 257..293 CDD:293791 10/37 (27%)
WD40 repeat 299..323 CDD:293791 8/23 (35%)
tep1XP_012825586.2 TROVE 309..634 CDD:399034
DUF4062 1008..1116 CDD:404200
WD40 1803..2077 CDD:238121 49/228 (21%)
WD40 repeat 1803..1838 CDD:293791
WD40 repeat 1843..1879 CDD:293791 6/29 (21%)
WD40 repeat 1885..1917 CDD:293791 9/31 (29%)
WD40 repeat 1922..1961 CDD:293791 3/38 (8%)
WD40 1963..2293 CDD:238121 55/201 (27%)
WD40 repeat 1967..2002 CDD:293791 11/34 (32%)
WD40 repeat 2009..2044 CDD:293791 7/34 (21%)
WD40 repeat 2054..2089 CDD:293791 12/34 (35%)
WD40 repeat 2095..2132 CDD:293791 10/37 (27%)
WD40 repeat 2137..2178 CDD:293791 8/25 (32%)
WD40 2176..2442 CDD:238121
WD40 repeat 2185..2222 CDD:293791
WD40 repeat 2229..2264 CDD:293791
WD40 repeat 2270..2304 CDD:293791
WD40 repeat 2311..2341 CDD:293791
WD40 2349..>2632 CDD:421866
WD40 repeat 2359..2393 CDD:293791
WD40 repeat 2400..2424 CDD:293791
WD40 repeat 2464..2527 CDD:293791
WD40 repeat 2537..2574 CDD:293791
WD40 repeat 2589..2623 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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