DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mical and WLIM1

DIOPT Version :10

Sequence 1:NP_001247015.1 Gene:Mical / 41225 FlyBaseID:FBgn0053208 Length:4743 Species:Drosophila melanogaster
Sequence 2:NP_172491.1 Gene:WLIM1 / 837558 AraportID:AT1G10200 Length:190 Species:Arabidopsis thaliana


Alignment Length:111 Identity:37/111 - (33%)
Similarity:49/111 - (44%) Gaps:13/111 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly  1086 LAFKKQAASEKCRFCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTNLRLGGYAFDRDDPQGRFYCT 1150
            :||  ...::||..|.:||||::|.|.:..|.|:.|.:||||...|:|..|    :..:|..||.
plant     1 MAF--AGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNY----NSFEGVLYCR 59

  Fly  1151 QHFRLPPKPLPQRTNKARKSAAAQP--ASPAVPPTAGSVPTAAATS 1194
            .||....|    ||....||....|  ..|. .|..|..|.....|
plant    60 PHFDQNFK----RTGSLEKSFEGTPKIGKPD-RPLEGERPAGTKVS 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MicalNP_001247015.1 UbiH 128..>263 CDD:440419
CH_SF 567..669 CDD:469584
LIM_Mical 1097..1153 CDD:188823 21/55 (38%)
PRK10819 <1450..>1557 CDD:236768
bMERB_dom 4592..4705 CDD:463467
WLIM1NP_172491.1 LIM1_SF3 6..68 CDD:188824 25/69 (36%)
LIM2_SF3 110..170 CDD:188825
Blue background indicates that the domain is not in the aligned region.

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