DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mical and PLIM2c

DIOPT Version :10

Sequence 1:NP_001247015.1 Gene:Mical / 41225 FlyBaseID:FBgn0053208 Length:4743 Species:Drosophila melanogaster
Sequence 2:NP_191682.2 Gene:PLIM2c / 825295 AraportID:AT3G61230 Length:213 Species:Arabidopsis thaliana


Alignment Length:186 Identity:48/186 - (25%)
Similarity:74/186 - (39%) Gaps:49/186 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1055 EANSDEKNAGSSNATTNTNNTVIPKSSSKVALAFKKQAASEKCRFCKQTVYLMEKTTVEGLVLHR 1119
            |:.:..||..::..|..:|:..  |:.::::..|  ....:||..||:|||.:||.|:||...|:
plant    69 ESGNFSKNFQTAGKTEKSNDAT--KAPNRLSSFF--SGTQDKCAACKKTVYPLEKMTMEGESYHK 129

  Fly  1120 NCLKCHHCHTNLRLGGY-AFDRDDPQGRFYCTQHFRLPPKPLPQ------RTNKARKSAAAQPAS 1177
            .|.:|.|....|....| |.|     |..||..||       .|      ..|...::||....|
plant   130 TCFRCAHSGCPLTHSSYAALD-----GVLYCKVHF-------SQLFLEKGNYNHVLQAAANHRRS 182

  Fly  1178 PAVPPTAGSVPTAAATSEHMDTTPPRDQVDLLETSRANASADAMSDDEANVIDEHE 1233
                           |:|...|.|..|:.:..|...::|:|           :|||
plant   183 ---------------TAEEDKTEPKEDEANPTEEETSDAAA-----------EEHE 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MicalNP_001247015.1 UbiH 128..>263 CDD:440419
CH_SF 567..669 CDD:469584
LIM_Mical 1097..1153 CDD:188823 22/56 (39%)
PRK10819 <1450..>1557 CDD:236768
bMERB_dom 4592..4705 CDD:463467
PLIM2cNP_191682.2 LIM1_SF3 7..69 CDD:188824 48/186 (26%)
LIM 107..167 CDD:413332 25/71 (35%)
Blue background indicates that the domain is not in the aligned region.

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