DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mical and Limd2

DIOPT Version :10

Sequence 1:NP_001247015.1 Gene:Mical / 41225 FlyBaseID:FBgn0053208 Length:4743 Species:Drosophila melanogaster
Sequence 2:NP_765985.1 Gene:Limd2 / 67803 MGIID:1915053 Length:128 Species:Mus musculus


Alignment Length:99 Identity:35/99 - (35%)
Similarity:51/99 - (51%) Gaps:16/99 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1063 AGSSNATT------NTNNTVIPKSSSKVALAFKKQA-ASEKCRFCKQTVYLMEKTTVEGLVLHRN 1120
            ||::.||.      ::.::.:.:|.|     |..:| ..|.|..|::|||.||:...:.|:.|.:
Mouse     5 AGAAQATPSHEAKGSSGSSTVQRSKS-----FSLRAQVKETCAACQKTVYPMERLVADKLIFHNS 64

  Fly  1121 CLKCHHCHTNLRLGGYAFDRDDPQGRFYCTQHFR 1154
            |..|.||||.|.||.||    ...|.|||..||:
Mouse    65 CFCCKHCHTKLSLGSYA----AMHGEFYCRPHFQ 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MicalNP_001247015.1 UbiH 128..>263 CDD:440419
CH_SF 567..669 CDD:469584
LIM_Mical 1097..1153 CDD:188823 24/55 (44%)
PRK10819 <1450..>1557 CDD:236768
bMERB_dom 4592..4705 CDD:463467
Limd2NP_765985.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25 4/19 (21%)
LIM_Eplin_like_1 41..93 CDD:188870 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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