DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mical and csrp3

DIOPT Version :9

Sequence 1:NP_001247015.1 Gene:Mical / 41225 FlyBaseID:FBgn0053208 Length:4743 Species:Drosophila melanogaster
Sequence 2:NP_001006836.1 Gene:csrp3 / 448578 XenbaseID:XB-GENE-1010170 Length:194 Species:Xenopus tropicalis


Alignment Length:119 Identity:30/119 - (25%)
Similarity:44/119 - (36%) Gaps:36/119 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1034 DVGERGRNKVASIAGQFGKKDEANSDEKNAGSSNATTNTNNTVIPKSSSKVALAFKKQAASEKCR 1098
            |.|||...:||              :...|..|..||:|:...            :|..|:|||.
 Frog    83 DTGERFGIEVA--------------ESHPARGSPTTTHTSKFT------------QKFGATEKCP 121

  Fly  1099 FCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTNLRLGGYAFDR---DDPQGRFYC 1149
            .|:::||..|:....|...|:.|.:|..|       |.:.|.   .:..|..||
 Frog   122 RCQKSVYAAERVMGGGQPWHKTCFRCAFC-------GKSLDSTTVTEKDGEIYC 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MicalNP_001247015.1 MDR <114..>160 CDD:302572
CH 563..>629 CDD:294029
LIM_Mical 1097..1153 CDD:188823 15/56 (27%)
Ehrlichia_rpt <2081..2479 CDD:118064
DUF3585 4592..4705 CDD:288945
csrp3NP_001006836.1 LIM1_CRP3 9..62 CDD:188865
LIM2_CRP3 120..173 CDD:188866 15/56 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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