DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mical and Csrp3

DIOPT Version :9

Sequence 1:NP_001247015.1 Gene:Mical / 41225 FlyBaseID:FBgn0053208 Length:4743 Species:Drosophila melanogaster
Sequence 2:NP_001185770.1 Gene:Csrp3 / 13009 MGIID:1330824 Length:194 Species:Mus musculus


Alignment Length:84 Identity:25/84 - (29%)
Similarity:35/84 - (41%) Gaps:14/84 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1066 SNATTNTNNTVIPKSSSKVALAFKKQAASEKCRFCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTN 1130
            :.|.|.:|       .||.:..|   ..||||..|.::||..||....|...|:.|.:|..|..:
Mouse    99 ARAATTSN-------PSKFSAKF---GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKS 153

  Fly  1131 LRLGGYAFDRDDPQGRFYC 1149
            |.    :.:..|..|..||
Mouse   154 LE----STNVTDKDGELYC 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MicalNP_001247015.1 MDR <114..>160 CDD:302572
CH 563..>629 CDD:294029
LIM_Mical 1097..1153 CDD:188823 16/53 (30%)
Ehrlichia_rpt <2081..2479 CDD:118064
DUF3585 4592..4705 CDD:288945
Csrp3NP_001185770.1 Interaction with TCAP. /evidence=ECO:0000250|UniProtKB:P50461 1..5
LIM1_CRP3 9..62 CDD:188865
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:P50463, ECO:0000255 64..69
Interaction with CLF2. /evidence=ECO:0000250|UniProtKB:P50461 94..105 2/5 (40%)
LIM2_CRP3 120..173 CDD:188866 16/53 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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