DRSC/TRiP Functional Genomics Resources

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Protein Alignment FBXO11 and Skp2

DIOPT Version :10

Sequence 1:NP_649954.1 Gene:FBXO11 / 41209 FlyBaseID:FBgn0037760 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster


Alignment Length:544 Identity:121/544 - (22%)
Similarity:195/544 - (35%) Gaps:142/544 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 MMDTTESSGAGTSQSTPPAL--------GASSTTASKSTCATVGSSTASTSAAAAAAASASAGSS 192
            ::.||:||.. ...|:|.||        |.....:.:|      ||:|.::.|.|.:|::...|:
  Fly    35 LVSTTKSSHY-EHPSSPSALTFEALEEMGIGMLDSEES------SSSALSAIALAVSATSDDNSN 92

  Fly   193 HQSPYDLRRKISASSHEQWPTSSSSAVAAAAAILVGPSSSSPPLVNPGASPSSSSSSS------- 250
            ..:|.   ..:|..:|:...|...|..:      .|..:...|.|....|.|..|:..       
  Fly    93 ETTPC---ASVSRMAHQLQHTQRLSLGS------TGDITLDSPAVEDSLSMSRQSAEKLQILAQA 148

  Fly   251 --SSSSSSSSASSSSSSSNVQAPSTSATFPVNNAPTTGATLAQPPNVHSSVPQQHCGALPVGAAI 313
              ||..|..|.:|:|.|..::.|..:.|  .||.....|:|...|:. |.:.|            
  Fly   149 KRSSLGSEGSGNSNSPSKRLRNPLAAVT--CNNQIDGTASLNFQPST-SRLAQ------------ 198

  Fly   314 EDNNYMLPARKRSRRLYTQGGEMGPSAGATGEAAGAGTAASGGAGCAPTAAQYLQYELPDEVLLA 378
                 :..|:|.|....|.......|.......|.:....||        ..|.: .|.||:||.
  Fly   199 -----VRQAKKPSTTNITTRIVAADSFFVFRTPAMSAHINSG--------INYFE-RLSDEILLD 249

  Fly   379 IFSYLMEQDLCRLALVCKRFNTIANDTELWKRLYQSVFEYDLPLFNPELCKFVFEKP-------- 435
            ||.:|.::.|.|:|.||:|||..:.|..||.||     :..|....|...:.:..:.        
  Fly   250 IFKWLPKKTLLRMATVCRRFNRCSRDETLWTRL-----DLGLRTIRPGALEQIVRRGVLVIRLAQ 309

  Fly   436 ---EESEYANPWKESFRQLYRGV-----------------HVRPGYQERRSSGRSIVFFNTIQAA 480
               :|..:| |:.|.||...:.:                 |.|   |.::.|..:|...:.|.|.
  Fly   310 TSIQEPAFA-PYTEVFRTRLQYLDLSMASITRSSLLTLLSHCR---QLKKISLENIELDDDICAE 370

  Fly   481 LDYPEERAAAGVFVPAGAGAGNV----------VSAGLSNTSASAGVGGASVNALVNIYEEQVAP 535
            :...|...|..:.:.:|..:.:|          .|..:|.|..||.    :|.|||.        
  Fly   371 IAKNEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISWTDLSAD----AVTALVT-------- 423

  Fly   536 TEHPGP-LIFLH-AGHYKGEYLFIDSDVALVGAAPGNVAESVILEREAGSTVMFVEGAKYAYVGY 598
              |..| ||.|: ||..:   :..||.||.:......:.|..:.:..:.:..:.....|:..:.|
  Fly   424 --HISPNLIRLNIAGCRR---VLFDSHVATLQKRCPQLLELDLSDCNSLTPTVITAIMKFKMLEY 483

  Fly   599 LT--------------LKFSPEVT 608
            |:              ||..|.:|
  Fly   484 LSVSRCYLIPATKFIELKSMPSLT 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FBXO11NP_649954.1 F-box_FBXO11 368..412 CDD:438863 20/43 (47%)
Beta_helix 650..798 CDD:463811
Beta_helix 735..890 CDD:463811
Beta_helix 919..1075 CDD:463811
UBR-box_UBR6_FBXO11 1090..1158 CDD:439074
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 19/42 (45%)
leucine-rich repeat 302..327 CDD:275381 6/25 (24%)
AMN1 309..480 CDD:187754 39/191 (20%)
leucine-rich repeat 328..352 CDD:275381 2/26 (8%)
leucine-rich repeat 353..376 CDD:275381 4/22 (18%)
leucine-rich repeat 377..402 CDD:275381 3/24 (13%)
leucine-rich repeat 403..428 CDD:275381 10/38 (26%)
leucine-rich repeat 429..455 CDD:275381 9/28 (32%)
leucine-rich repeat 456..480 CDD:275381 2/23 (9%)
leucine-rich repeat 481..500 CDD:275381 2/18 (11%)
leucine-rich repeat 506..529 CDD:275381 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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