DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment topi and STP4

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_010235.1 Gene:STP4 / 851512 SGDID:S000002206 Length:490 Species:Saccharomyces cerevisiae


Alignment Length:473 Identity:98/473 - (20%)
Similarity:151/473 - (31%) Gaps:155/473 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PDDLQPGATVLATNEST----------GGLERIVSHEELSRFFAVGPAGALPMPTDVV----VER 74
            |..|.|  |.|::|.|:          ..|..:...|...|..::......|:|..|:    .|.
Yeast   114 PHSLSP--TPLSSNSSSHVILPPISSFTNLITVAEREFNGRSNSLHANFTSPVPRTVLDHHRHEL 176

  Fly    75 TLADPAFKQILQEADGKKGFDPQAEQMKIRDFLAGVTSSKMTTEQSVFHGSRSNSSASTVNRIKC 139
            |..:|         :...||..             :|.|..|..||:.                 
Yeast   177 TFCNP---------NNTTGFKT-------------ITPSPPTQHQSIL----------------- 202

  Fly   140 PTCLVQFDAVAFQNHSCEAKPIE----VAVPQQEKPHLVPTVSAPPAP-LSKPASERVIRENQVR 199
            ||.:   |.|. ::.|..:.|:.    :.|.||::..|..:.||...| :..|    :..|:..|
Yeast   203 PTAV---DNVP-RSKSVSSLPVSGFPPLIVKQQQQQQLNSSSSASALPSIHSP----LTNEHTSR 259

  Fly   200 LRRYIKDEMKYDLATGIESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPH 264
            ....:||..|      |...||.     .||.:|...:.:.|   .|...|   |.|   .::||
Yeast   260 YSSSLKDSAK------ITKQRKK-----KECPICHNFYANLS---THKSTH---LTP---EDRPH 304

  Fly   265 TIPAAGLHVVVKCNSCGRIFYDPQVAFRHGLIH-------------------DSEHSTMRQSPMT 310
                       ||..|.|.|.......||...|                   |.:..|.|    |
Yeast   305 -----------KCPICQRGFARNNDLIRHKKRHWKDEFMQIYARESDNNSGADDQDDTAR----T 354

  Fly   311 QVPSNRADFNELLLDGEMLIDNDPAFATSNQNTNPPKKEMFSSLI-LGSVLQCEFCEYIFADIAE 374
            ...::..|.|:.|           |.::|::.|...||....||. :....:|.:...:.....|
Yeast   355 SANNDSDDSNDKL-----------AASSSSEETKLLKKNQLKSLYKIKGAFKCPYNSTLINLDME 408

  Fly   375 LLVHSASHVAERRFEC------TACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRYFV--- 430
            :..|.:..:......|      :.||...|..|  ::||:......:|         .|..|   
Yeast   409 VYPHKSRSLYFEPINCHQTGVFSRCDTFKNHLK--ALHFEYPPKTKKE---------DRGVVPGK 462

  Fly   431 CNVCELKFANTDL-LQEH 447
            |..|.|:|.|.|: |.:|
Yeast   463 CKHCGLQFPNVDVWLNKH 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 4/19 (21%)
C2H2 Zn finger 277..297 CDD:275368 6/19 (32%)
C2H2 Zn finger 431..453 CDD:275368 8/18 (44%)
COG5048 <450..647 CDD:227381
C2H2 Zn finger 469..490 CDD:275368
zf-C2H2 511..533 CDD:278523
C2H2 Zn finger 513..564 CDD:275368
C2H2 Zn finger 541..561 CDD:275368
zf-H2C2_2 555..581 CDD:290200
C2H2 Zn finger 572..592 CDD:275368
zf-H2C2_2 585..609 CDD:290200
zf-C2H2 598..620 CDD:278523
C2H2 Zn finger 600..620 CDD:275368
zf-H2C2_2 612..637 CDD:290200
C2H2 Zn finger 628..646 CDD:275368
STP4NP_010235.1 COG5048 14..442 CDD:227381 85/424 (20%)
C2H2 Zn finger 279..296 CDD:275368 4/19 (21%)
C2H2 Zn finger 306..326 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.