DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment topi and E4f1

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001171975.1 Gene:E4f1 / 681359 RGDID:1596731 Length:783 Species:Rattus norvegicus


Alignment Length:751 Identity:153/751 - (20%)
Similarity:253/751 - (33%) Gaps:224/751 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 KCPTCLVQFDAVA-FQNH----SC-----EAKPIEVAVPQQEKPHLVPTVS--APPAPLS----- 185
            :|..|.|:|.|:. |..|    :|     ||.|...|........:|||.:  .|..|::     
  Rat    58 RCGRCQVEFTALEDFVQHKIQKTCHRAPQEALPTTSAATSLLGQEVVPTAAEEGPEEPITVAHIV 122

  Fly   186 ----------------------------------------KPASER-----VIRE-NQVRLRRYI 204
                                                    .|.|..     :|.| .|.:::..:
  Rat   123 VEATSLAEDMSHAPDLVGSGHIKEVIVAAEAEPGDGEMAEAPGSPNHQELGLIGEGEQAQVKLLV 187

  Fly   205 KDEMKY-------DLATG--------IESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDL 254
            ..|.:|       ...||        ..||||:     :||.:|...|.....|:||..:|    
  Rat   188 NKEGRYVCMLCHKTFKTGSILKAHMVTHSSRKD-----HECKLCGASFRTKGSLIRHHRRH---- 243

  Fly   255 IPSQTSEQPHTIPAAGLHVVVKCNSCGRIFYDPQVAFRHGLIHDSEHSTMRQSPMTQVPSNRADF 319
                |.|:|:           ||..||:.|.:.....||         ....:|.|:    :..|
  Rat   244 ----TDERPY-----------KCAKCGKSFRESGALTRH---------LKSLTPCTE----KIRF 280

  Fly   320 NELLLDGEMLIDNDPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVA 384
            :   :..:..:..:...|.|:.:|    ....:|.:.|..::.....::..|....::|.. ||.
  Rat   281 S---ISKDTAVGKEEVPAGSSAST----VGTVTSSVAGEPMETSPVIHLVTDAKGTVIHEV-HVQ 337

  Fly   385 ERRF------------ECTACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRY--------- 428
            .:..            :|.........::|..:|         :|:::..:.|.|.         
  Rat   338 MQELPLGMKALTPESADCEELPCSRENSRENLLH---------QAMQNSGIVLDRVAGEESTLQP 393

  Fly   429 ----------FVCNVCELKFANTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFL 483
                      ......||.....:.::....:.....||.:        ||..|...|..|....
  Rat   394 APPSGSSPQSLGDGPSELPLLEVEQIETQVASEAATVPRTH--------PCSQCSETFPSAATLE 450

  Fly   484 AHSEEKHLNKKKREKETRNTGAGRI--RQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQEENC 546
            ||         ||         |.|  |.:.|..|||::.::..|.:|...|...:.|.|.:  |
  Rat   451 AH---------KR---------GHIGPRPFTCTQCGKAFPKAYLLKKHQEVHVHERRFRCGD--C 495

  Fly   547 DRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRAD 611
            .:.:.....:..| |:.|:.|||:.|..||||:.|.:....|...|..|:.:.|:.|.:.|....
  Rat   496 GKLYKTIAHVRGH-RRVHSDERPFPCPQCGKRYKTKNAQQVHFRTHLEEKPHVCQFCSRGFREKG 559

  Fly   612 ALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARHSHLDANSRLMMQMQKFQLETAAAQKAQ 676
            :|..|.|.||||||:.|..|.:.|.:.|..::|:|.:...|.....|::..:    ..:||....
  Rat   560 SLVRHVRHHTGEKPFKCYKCGRGFAEHGTLNRHLRTKGGCLLEVEELLVSEE----SPSAAATVL 620

  Fly   677 SHNPEQQDNDVAGGASTSDVPSGSGFMSTEPSVAEMQYSITPEQQEEMVCVPIDEVNNSFFMSHY 741
            :.:|.           |..|...|....|:..:.|    .|.:..|......|.|...:...||.
  Rat   621 AEDPH-----------TVLVEFSSVVADTQEYIIE----ATADDTETSEATEIIEGTQTEVDSHI 670

  Fly   742 MQAVP--MEEDGSGQHIIVFEQPGQNMDMMSIYDQQ 775
            |:.|.  :.:.|:|..|||     ||:.|    ||:
  Rat   671 MKVVQQIVHQAGAGHQIIV-----QNVTM----DQE 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 6/19 (32%)
C2H2 Zn finger 277..297 CDD:275368 6/19 (32%)
C2H2 Zn finger 431..453 CDD:275368 2/21 (10%)
COG5048 <450..647 CDD:227381 56/198 (28%)
C2H2 Zn finger 469..490 CDD:275368 6/20 (30%)
zf-C2H2 511..533 CDD:278523 6/21 (29%)
C2H2 Zn finger 513..564 CDD:275368 12/50 (24%)
C2H2 Zn finger 541..561 CDD:275368 3/19 (16%)
zf-H2C2_2 555..581 CDD:290200 11/25 (44%)
C2H2 Zn finger 572..592 CDD:275368 7/19 (37%)
zf-H2C2_2 585..609 CDD:290200 6/23 (26%)
zf-C2H2 598..620 CDD:278523 6/21 (29%)
C2H2 Zn finger 600..620 CDD:275368 6/19 (32%)
zf-H2C2_2 612..637 CDD:290200 12/24 (50%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
E4f1NP_001171975.1 COG5048 193..594 CDD:227381 101/483 (21%)
C2H2 Zn finger 195..215 CDD:275368 2/19 (11%)
zf-C2H2 221..243 CDD:278523 7/21 (33%)
C2H2 Zn finger 223..243 CDD:275368 6/19 (32%)
zf-H2C2_2 235..258 CDD:290200 11/41 (27%)
C2H2 Zn finger 251..269 CDD:275368 6/26 (23%)
C2H2 Zn finger 436..456 CDD:275368 8/37 (22%)
zf-H2C2_2 449..471 CDD:290200 11/39 (28%)
zf-C2H2 462..484 CDD:278523 6/21 (29%)
C2H2 Zn finger 464..484 CDD:275368 6/19 (32%)
C2H2 Zn finger 492..512 CDD:275368 4/22 (18%)
zf-H2C2_2 504..529 CDD:290200 11/25 (44%)
C2H2 Zn finger 520..540 CDD:275368 7/19 (37%)
C2H2 Zn finger 548..568 CDD:275368 6/19 (32%)
zf-H2C2_2 560..584 CDD:290200 11/23 (48%)
C2H2 Zn finger 576..595 CDD:275368 5/18 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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