DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and Zfp966

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001170878.1 Gene:Zfp966 / 667962 MGIID:3709288 Length:485 Species:Mus musculus


Alignment Length:457 Identity:122/457 - (26%)
Similarity:178/457 - (38%) Gaps:91/457 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 IKDEMKYDLATGIESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHTIPA 268
            |:|..:...:.| ...|:::|:..:|...|.:.|.:.|...||:..|         :.:.|    
Mouse    71 IEDHFQTSRSHG-RHERRSSAEQHSEFIPCGKAFAYQSRSQRHVRIH---------NGEKH---- 121

  Fly   269 AGLHVVVKCNSCGRIFYDPQVAFRHGLIHDSEHSTMRQSPMTQVPSNRADFNELLLDGEMLIDND 333
                  .:||.||:.|              ...|.:::...|.......:.|..          .
Mouse   122 ------YECNQCGKDF--------------GTRSVLQRLKRTHTGEKPYECNHY----------G 156

  Fly   334 PAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAERRFECTACDIQMN 398
            .|||.|:......:|....     ...:|..|...||.:::|.:|...|..|:.:||..|.....
Mouse   157 KAFAESSTLQIHKRKHTGE-----KPYECNHCVKAFAKMSKLQIHKRIHTGEKPYECKQCGKAFT 216

  Fly   399 TAKEASIHFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFANTDLLQEHRCTSFHYFPRLNENGK 463
            .:....||.:|.             |..:.:.|..|...|..:..||.|:.|         ..|:
Mouse   217 QSSHLGIHKRTH-------------TGEKPYECKQCGKAFTRSSTLQTHKQT---------HTGE 259

  Fly   464 KLLLP--CDFCDVNF----EFAHDFLAHSEEKHLNKKKREKETRNTGAGRI--------RQYLCD 514
            |   |  |..||..|    |.......|:.||....|:..|....:|..:|        :.|.|.
Mouse   260 K---PYECKQCDKAFVRRGELQIHKRTHTGEKPYECKQCGKAFAQSGTLQIHKRTHTGEKPYECK 321

  Fly   515 ICGKSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRF 579
            .|||::..||.|..|.|.|.|.||:.|::  ||:.|..|.:|..| ::.||||:||.|..|||.|
Mouse   322 QCGKAFAHSSTLQIHKRTHTGEKPYECKQ--CDKAFVKRGELQIH-KQTHTGEKPYECKQCGKAF 383

  Fly   580 LTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKH 644
            ........|...|.||:.:||.:|||.|.:..||:.|:|.|||||||.|..|.|.|........|
Mouse   384 AQSGTLQVHERTHTGEKPFECNQCGKAFVQCIALRIHERTHTGEKPYECKQCGKAFAHSNTLQIH 448

  Fly   645 IR 646
            .|
Mouse   449 KR 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 5/19 (26%)
C2H2 Zn finger 277..297 CDD:275368 5/19 (26%)
C2H2 Zn finger 431..453 CDD:275368 7/21 (33%)
COG5048 <450..647 CDD:227381 75/211 (36%)
C2H2 Zn finger 469..490 CDD:275368 7/24 (29%)
zf-C2H2 511..533 CDD:278523 10/21 (48%)
C2H2 Zn finger 513..564 CDD:275368 20/50 (40%)
C2H2 Zn finger 541..561 CDD:275368 7/19 (37%)
zf-H2C2_2 555..581 CDD:290200 13/25 (52%)
C2H2 Zn finger 572..592 CDD:275368 6/19 (32%)
zf-H2C2_2 585..609 CDD:290200 10/23 (43%)
zf-C2H2 598..620 CDD:278523 10/21 (48%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:290200 15/24 (63%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
Zfp966NP_001170878.1 KRAB 22..63 CDD:366587
COG5048 94..478 CDD:227381 117/433 (27%)
C2H2 Zn finger 99..116 CDD:275368 5/16 (31%)
C2H2 Zn finger 124..144 CDD:275368 6/33 (18%)
C2H2 Zn finger 152..172 CDD:275368 5/29 (17%)
C2H2 Zn finger 180..200 CDD:275368 6/19 (32%)
C2H2 Zn finger 208..228 CDD:275368 4/19 (21%)
C2H2 Zn finger 236..256 CDD:275368 7/28 (25%)
C2H2 Zn finger 264..284 CDD:275368 5/19 (26%)
C2H2 Zn finger 292..312 CDD:275368 4/19 (21%)
C2H2 Zn finger 320..340 CDD:275368 9/19 (47%)
C2H2 Zn finger 348..368 CDD:275368 7/22 (32%)
C2H2 Zn finger 376..396 CDD:275368 6/19 (32%)
C2H2 Zn finger 404..424 CDD:275368 9/19 (47%)
C2H2 Zn finger 432..452 CDD:275368 6/19 (32%)
C2H2 Zn finger 460..480 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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