DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and znf1085

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:XP_021330858.1 Gene:znf1085 / 567150 ZFINID:ZDB-GENE-080218-7 Length:1074 Species:Danio rerio


Alignment Length:672 Identity:156/672 - (23%)
Similarity:230/672 - (34%) Gaps:181/672 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 RKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHTIPAAG----------LHVV 274
            |.:..:.|..|..|.:.|.||.....||..|        |.|:|::.|..|          :|:.
Zfish   143 RIHTGERPYTCQQCGQTFYHAGNFAAHMRIH--------TGEKPYSCPQCGKSFKRNGTLEIHMR 199

  Fly   275 V-------KCNSCGRIFYDPQVAFRHGLIHDSE------------------HSTMR----QSPMT 310
            :       .||.||:.|......:.|.:||..|                  |..||    :.|.|
Zfish   200 IHTGEKPYTCNQCGKSFNQSSNLYNHMMIHTGEKPFKCTQCGKSFNRSSDLHQHMRIHTGEKPYT 264

  Fly   311 QVPSNRADFNELLLDGEMLIDNDPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAEL 375
            .....::.:....|...|.|         :....|              ..|..|...|:..:..
Zfish   265 CTQCGKSFYCSSHLHQHMRI---------HTGEKP--------------FTCTQCGKSFSQSSHF 306

  Fly   376 LVHSASHVAERRFECTACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFAN 440
            ..|...|..|:.|.||.|....:. ...:.|.:..             |..:.|.|..|...|:.
Zfish   307 KQHMRIHTEEKPFTCTQCGKSFSQXSNLNRHMRIH-------------TGEKPFTCTQCGKSFSQ 358

  Fly   441 TDLLQEH--------RCTSFHYFPRLNENGKKLL-----------------LPCDFCDVNFEFAH 480
            :..|.:|        .||.    |:.   ||.|.                 ..|..|..:|..:.
Zfish   359 SSHLNQHIMSHTGEKPCTC----PQC---GKSLASKSKLKIHMMIHTGEKPFTCTQCGKSFNQSS 416

  Fly   481 DFLAHSE----EK---------------HLNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHL 526
            .|..|:.    ||               |||    :....:||.   :.:.|..||||:.|||.|
Zfish   417 SFNQHTRIHTGEKPFKCTQCGKSFNCSSHLN----DHMMIHTGE---KPFACTQCGKSFRQSSSL 474

  Fly   527 WQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLI 591
            .||.|.|.|.:||.|.:  |.|.|.....||.| ...||||:|:.|..|||.|...|.|.:|..|
Zfish   475 NQHTRIHTGERPFTCTQ--CGRSFKCSSHLNHH-TMIHTGEKPFKCTQCGKSFRQSSSFNKHMRI 536

  Fly   592 HRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRA--------- 647
            |.||:.:.|.:|||.|..:..|..|.|||||:.|::|..|.|:|.|....::|.|.         
Zfish   537 HTGEKPFTCTQCGKSFICSSQLNEHMRIHTGKTPFTCTQCGKSFSQSSYLNRHTRIHTGEKPFTC 601

  Fly   648 --------RHSHLDANSRLMMQMQKFQLETAAAQKAQSHNPEQQDNDVAGGASTSDVPSGSGFMS 704
                    |.|||:.:.|:....:.|.........:|..|.........|....:....|..|..
Zfish   602 TLCGKSFNRSSHLNKHMRIHTGEKPFTCTQCGKSFSQKQNLTIHMRIHTGEKPYTCTECGKSFPH 666

  Fly   705 TEPSVAEMQYSITPEQQEEMVCVPIDEVNNSFFMSHYMQAVPMEEDGSGQHIIVFEQPGQNMDMM 769
            |......|..:...|:.|::      ::..:|.:.        :||...|..::.|..|:..:..
Zfish   667 TGSLKHHMIMAFIKEESEDV------KIEETFTVK--------QEDLQEQTDLIEENEGRKEEEH 717

  Fly   770 SIYDQQQVGEPMH--ESGVPKR 789
            .:    ::.|..|  ..|:.||
Zfish   718 HV----KIEEKTHLQTDGILKR 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 7/19 (37%)
C2H2 Zn finger 277..297 CDD:275368 6/19 (32%)
C2H2 Zn finger 431..453 CDD:275368 7/29 (24%)
COG5048 <450..647 CDD:227381 76/232 (33%)
C2H2 Zn finger 469..490 CDD:275368 7/39 (18%)
zf-C2H2 511..533 CDD:278523 12/21 (57%)
C2H2 Zn finger 513..564 CDD:275368 23/50 (46%)
C2H2 Zn finger 541..561 CDD:275368 7/19 (37%)
zf-H2C2_2 555..581 CDD:290200 13/25 (52%)
C2H2 Zn finger 572..592 CDD:275368 8/19 (42%)
zf-H2C2_2 585..609 CDD:290200 11/23 (48%)
zf-C2H2 598..620 CDD:278523 8/21 (38%)
C2H2 Zn finger 600..620 CDD:275368 8/19 (42%)
zf-H2C2_2 612..637 CDD:290200 12/24 (50%)
C2H2 Zn finger 628..646 CDD:275368 6/17 (35%)
znf1085XP_021330858.1 COG5048 39..444 CDD:227381 65/351 (19%)
C2H2 Zn finger 41..61 CDD:275368
C2H2 Zn finger 69..89 CDD:275368
C2H2 Zn finger 97..117 CDD:275368
C2H2 Zn finger 125..145 CDD:275368 1/1 (100%)
C2H2 Zn finger 153..173 CDD:275368 7/19 (37%)
C2H2 Zn finger 181..201 CDD:275368 3/19 (16%)
C2H2 Zn finger 209..229 CDD:275368 6/19 (32%)
C2H2 Zn finger 237..257 CDD:275368 3/19 (16%)
COG5048 261..676 CDD:227381 115/467 (25%)
C2H2 Zn finger 265..285 CDD:275368 3/28 (11%)
C2H2 Zn finger 293..313 CDD:275368 4/19 (21%)
C2H2 Zn finger 321..341 CDD:275368 4/19 (21%)
C2H2 Zn finger 349..369 CDD:275368 5/19 (26%)
C2H2 Zn finger 377..397 CDD:275368 4/26 (15%)
C2H2 Zn finger 405..425 CDD:275368 5/19 (26%)
C2H2 Zn finger 433..453 CDD:275368 3/23 (13%)
C2H2 Zn finger 461..481 CDD:275368 12/19 (63%)
C2H2 Zn finger 489..509 CDD:275368 7/22 (32%)
C2H2 Zn finger 517..537 CDD:275368 8/19 (42%)
C2H2 Zn finger 545..565 CDD:275368 8/19 (42%)
C2H2 Zn finger 573..593 CDD:275368 7/19 (37%)
COG5048 597..1013 CDD:227381 26/157 (17%)
C2H2 Zn finger 601..621 CDD:275368 5/19 (26%)
C2H2 Zn finger 629..649 CDD:275368 2/19 (11%)
C2H2 Zn finger 657..674 CDD:275368 3/16 (19%)
C2H2 Zn finger 743..763 CDD:275368
C2H2 Zn finger 771..791 CDD:275368
C2H2 Zn finger 799..819 CDD:275368
C2H2 Zn finger 827..847 CDD:275368
C2H2 Zn finger 855..875 CDD:275368
C2H2 Zn finger 883..903 CDD:275368
C2H2 Zn finger 911..931 CDD:275368
C2H2 Zn finger 939..959 CDD:275368
C2H2 Zn finger 967..987 CDD:275368
C2H2 Zn finger 995..1015 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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