DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment topi and CG1792

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_651878.1 Gene:CG1792 / 43727 FlyBaseID:FBgn0039860 Length:372 Species:Drosophila melanogaster


Alignment Length:346 Identity:85/346 - (24%)
Similarity:133/346 - (38%) Gaps:78/346 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   388 FECTACDIQMNTA---KEASIHFQTDCIFMREAIRSLNVTLSRYFVCNV-CELKFAN-------T 441
            |.|:.|::.:.||   :|..|..|..   ::|:....|..|...|...| .|:::|.       .
  Fly    52 FICSPCELDLQTAIAFRERVIRTQKT---LQESPNLGNAELIESFAVGVEKEIQYAEEVTEIEVI 113

  Fly   442 DLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEKHLNKKKREKET------ 500
            |||.|.     |......|       |.:.|:.|.:  ......::||.|.:..:...|      
  Fly   114 DLLPEE-----HLLEETEE-------PYEICEQNEQ--PQVKVPAQEKKLRRSTKTTPTVFTSVK 164

  Fly   501 --RNTGAGRI-------------------RQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQEE 544
              .|:.|.|.                   |..:|:.||:.:|..|:...||..|.|||.|.|  :
  Fly   165 FADNSQATRTQWSRLTEDEVVALKRERRKRDCICEQCGRHFTCPSNFKLHLLRHTGVKSFAC--D 227

  Fly   545 NCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQH-RLIHRGERRYECEECGKRFY 608
            .|.::|.....|..| ::.|.|...:.|..|...:...|...|| |:.|...:.:.|:||.|.|.
  Fly   228 QCSQQFYTATLLRRH-QELHAGNALFQCRYCEATYSNASGRIQHERMRHTNVKPFTCKECNKSFA 291

  Fly   609 RADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRAR-HSHLDANSRLMMQMQKFQLETAAA 672
            .:..|:.|...|||.:.:.|..|..:|.:|.....|.|:: |:|                 |::|
  Fly   292 MSGKLRTHMLSHTGVRAFHCDSCQVSFVRRSHLTSHYRSKGHAH-----------------TSSA 339

  Fly   673 QKAQSHNPEQQDNDVAGGAST 693
            |.|.. ||.:.|...:.|..|
  Fly   340 QAALD-NPVELDVKASNGMQT 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368 7/29 (24%)
COG5048 <450..647 CDD:227381 54/224 (24%)
C2H2 Zn finger 469..490 CDD:275368 3/20 (15%)
C2H2 Zn finger 513..564 CDD:275368 17/50 (34%)
C2H2 Zn finger 541..561 CDD:275368 5/19 (26%)
C2H2 Zn finger 572..592 CDD:275368 6/20 (30%)
C2H2 Zn finger 600..620 CDD:275368 7/19 (37%)
zf-H2C2_2 612..637 CDD:463886 8/24 (33%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
CG1792NP_651878.1 zf-AD 6..80 CDD:214871 8/30 (27%)
C2H2 Zn finger 198..218 CDD:275368 7/19 (37%)
C2H2 Zn finger 226..243 CDD:275368 5/19 (26%)
SUF4-like 254..>301 CDD:411020 14/46 (30%)
C2H2 Zn finger 254..275 CDD:411020 6/20 (30%)
C2H2 Zn finger 254..275 CDD:275368 6/20 (30%)
C2H2 Zn finger 283..303 CDD:275368 7/19 (37%)
C2H2 Zn finger 283..301 CDD:411020 7/17 (41%)
zf-H2C2_2 296..320 CDD:463886 8/23 (35%)
zf-met 309..333 CDD:463736 6/23 (26%)
C2H2 Zn finger 311..329 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.