DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and CG6654

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_650429.1 Gene:CG6654 / 41831 FlyBaseID:FBgn0038301 Length:639 Species:Drosophila melanogaster


Alignment Length:717 Identity:175/717 - (24%)
Similarity:251/717 - (35%) Gaps:246/717 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 RTLADPAFKQILQEADGKKGFDPQAEQMKIRDFLAGVTSSKMTTEQSVFHGSRSNSSASTVNRIK 138
            |||     :|:|..|      .|:....|:     .::....||:|:|        ..::....:
  Fly    74 RTL-----RQLLPNA------LPEEPDSKV-----SISCPVATTDQAV--------QTTSWEPDR 114

  Fly   139 CPTCLVQFDAV----AFQNHSCEAKPIEVAVPQQEKPHLVPTVSAPPAPLSKPAS---------- 189
            | |..||.|||    |.||.|.....|.|.:..:.:.. |.....|..|:.|..|          
  Fly   115 C-TASVQTDAVTTTDAEQNTSLIKSTISVDLDYEGEGE-VFDYELPDEPVEKTTSLILQVQGNLK 177

  Fly   190 ---------------------ERVIRENQVRLRRYIKDEMKYDLATGIE-SSRKNAAK------- 225
                                 |:.|||..:.:...:.:|.:....|..: ::||:|||       
  Fly   178 DEKEVVFTQTNVIYEGDDHELEQQIRECNLAIFEGVDNEAEIITVTAPQVTTRKSAAKLLTQQEN 242

  Fly   226 -------GPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQ--------PHTIPAAGLHVVV 275
                   |..|             ..|.:||..:.....:||.:        |.|.|:       
  Fly   243 DKHQTPVGSKE-------------EARELEKEQVPQSAKRTSRRRGVVKQDVPATPPS------- 287

  Fly   276 KCNSCGRIFYDPQVAFRHGLIHDSEHSTMRQSPMTQ--VPSNRADFNELLLDGEMLIDNDPAFAT 338
                                  |:|.|..:....||  :.:.||        |.:   |.|: .|
  Fly   288 ----------------------DAEPSPKQHRLGTQRKLSAPRA--------GTV---NGPS-TT 318

  Fly   339 SNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAERRFECTACDIQMNTAKEA 403
            |...|.|..|           ..|:.|...||....|::|       ||                
  Fly   319 SGAATTPELK-----------YHCDRCNAGFAVEKSLMIH-------RR---------------- 349

  Fly   404 SIHFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFANTDLLQEH--------------RCTSFHY 454
                |..||             :|.:.||.||..|.:.|.|.||              ||.|...
  Fly   350 ----QKGCI-------------NRNYKCNECEKVFVSPDHLAEHQASHGAHNCPECGIRCDSKEA 397

  Fly   455 FPRLNENGKK--LLLPCDFCDVNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDICG 517
            ..:....|.|  |...|:.|...|......             |:....:||.   :.::|:|||
  Fly   398 LSKHMVQGHKRNLRNQCNICQKVFTMLSTL-------------RDHMRIHTGE---KPFVCNICG 446

  Fly   518 KSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTG 582
            ||:||:::|.||...|...|.|.|  |.|...|..:.:|..|.| .|||::|:.|.||..||.|.
  Fly   447 KSFTQNANLRQHKLRHSETKSFKC--ELCPHSFVTKAELTSHAR-THTGDKPFECEVCLARFTTS 508

  Fly   583 SVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRA 647
            ....:|:..|.|||.|.|:.|..||...:.||||:|.||||:||.|.||:|||.||||...|.|.
  Fly   509 CSLAKHKRKHTGERPYACDLCPMRFTALNVLKNHRRTHTGERPYVCPFCSKTFTQRGDCQMHQRT 573

  Fly   648 RHSHLDANSRLMMQMQKFQL------ETAAAQKAQSH--NPEQQDNDVAGGASTSDVPSGSGFMS 704
            .            |.::..:      |..:..:.:||  ..||.|..:......|:..:|||.:.
  Fly   574 H------------QGERIYICPVCNEEFKSMPEMRSHLAGHEQHDKRLVHFTFLSNKENGSGALE 626

  Fly   705 TE 706
            .|
  Fly   627 EE 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 2/19 (11%)
C2H2 Zn finger 277..297 CDD:275368 0/19 (0%)
C2H2 Zn finger 431..453 CDD:275368 12/35 (34%)
COG5048 <450..647 CDD:227381 73/198 (37%)
C2H2 Zn finger 469..490 CDD:275368 3/20 (15%)
zf-C2H2 511..533 CDD:278523 11/21 (52%)
C2H2 Zn finger 513..564 CDD:275368 21/50 (42%)
C2H2 Zn finger 541..561 CDD:275368 6/19 (32%)
zf-H2C2_2 555..581 CDD:290200 12/25 (48%)
C2H2 Zn finger 572..592 CDD:275368 7/19 (37%)
zf-H2C2_2 585..609 CDD:290200 10/23 (43%)
zf-C2H2 598..620 CDD:278523 10/21 (48%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:290200 17/24 (71%)
C2H2 Zn finger 628..646 CDD:275368 11/17 (65%)
CG6654NP_650429.1 zf-AD 6..79 CDD:285071 3/9 (33%)
C2H2 Zn finger 331..354 CDD:275368 9/49 (18%)
COG5048 <357..570 CDD:227381 83/231 (36%)
C2H2 Zn finger 360..380 CDD:275368 9/19 (47%)
C2H2 Zn finger 385..406 CDD:275370 3/20 (15%)
C2H2 Zn finger 414..434 CDD:275368 4/32 (13%)
zf-H2C2_2 427..451 CDD:290200 9/39 (23%)
C2H2 Zn finger 442..490 CDD:275368 21/50 (42%)
C2H2 Zn finger 470..487 CDD:275368 5/18 (28%)
zf-H2C2_2 482..507 CDD:290200 12/25 (48%)
C2H2 Zn finger 498..518 CDD:275368 7/19 (37%)
zf-H2C2_2 510..534 CDD:290200 9/23 (39%)
C2H2 Zn finger 526..546 CDD:275368 9/19 (47%)
zf-H2C2_2 539..563 CDD:290200 17/23 (74%)
C2H2 Zn finger 554..574 CDD:275368 12/19 (63%)
C2H2 Zn finger 582..602 CDD:275368 3/19 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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