DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and su(Hw)

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001247098.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster


Alignment Length:849 Identity:173/849 - (20%)
Similarity:297/849 - (34%) Gaps:200/849 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PDDLQPGATVLATNE----------STGGLERIVSHEELSRFFAVGPAGALPMPTDVVVERTLAD 78
            |.|.:|...:...|:          :|....|..|:::..|....|..      ..::.|..|..
  Fly    23 PKDKRPATRMKLLNDVGAGEDSEASTTTTTSRTPSNKQEKRGSVAGSR------IKILNEEILGT 81

  Fly    79 PAFKQILQEADGKKGFDPQAEQMKIRDFLAGVTSSKMTTEQSVFHGSRSNSSASTVNRIKCPTCL 143
            |.    .::....|...|.|..:||       .:.|.|...:|.....:....|...|.|....:
  Fly    82 PK----TEKRGATKSTAPAASTVKI-------LNEKKTPSATVTAVETTKIKTSPSKRKKMEHYV 135

  Fly   144 VQFDAVAFQNHSCEAKPIEVAVPQQEKPHLVPTVSAPPAPLSKPASERVIRENQVRLRRYIKDEM 208
            :|    |.::.:.:|......|.:::     .|:....|...:....|:...|.   :..:..|.
  Fly   136 LQ----AVKSENTKADTTVTVVTEED-----DTIDFILADDEEVVPGRIENNNG---QEIVVTED 188

  Fly   209 KYDLA-TGIESSRKNAAKGPNE-----------CTMCDRKFVHASGLVRHMEKHALDLIPSQTSE 261
            ..||. .|.|....::.||.:.           |..|.:.|.....|.:|:|....|        
  Fly   189 DEDLGEDGDEDGEDSSGKGNSSQTKIKEIVEHVCGKCYKTFRRVQSLKKHLEFCRYD-------- 245

  Fly   262 QPHTIPAAGLHVVVKCNSCGRIFYDPQVAFRHGLIHDSEHSTMRQSPMTQVPSNRADFNELLLDG 326
                   :|.|                               :|::.|.:      :..::..|.
  Fly   246 -------SGYH-------------------------------LRKADMLK------NLEKIEKDA 266

  Fly   327 EMLIDNDPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVH-SASHVAERRFEC 390
            .::...|..|..|         |.:.:..||.: .|..|...|........| ..:|.....|.|
  Fly   267 VVMEKKDICFCCS---------ESYDTFHLGHI-NCPDCPKSFKTQTSYERHIFITHSEFSDFPC 321

  Fly   391 TACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFANTDLLQEHR----CTS 451
            :.|:..:.:....::|            ...:.:..:.:.|.:|...|..:..|:.|:    |:|
  Fly   322 SICNANLRSEALLALH------------EEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSS 374

  Fly   452 FHYFPRLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDIC 516
                   ||..   .:.|..||..| :..|.|....::||..:..:|.          :|:|..|
  Fly   375 -------NETD---TMSCKVCDRVF-YRLDNLRSHLKQHLGTQVVKKP----------EYMCHTC 418

  Fly   517 GKSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLT 581
            ...:...|.|..|:|.|.|.|||.|  :.||:||:....|..| |:.||||:||.|.||.:.|..
  Fly   419 KNCFYSLSTLNIHIRTHTGEKPFDC--DLCDKKFSALVALKKH-RRYHTGEKPYSCTVCNQAFAV 480

  Fly   582 GSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIR 646
            ..|..:|...|.|||.::|:||||.|.:|..|:.|.:.|.  :|:.|..|.:.|:.....::|::
  Fly   481 KEVLNRHMKRHTGERPHKCDECGKSFIQATQLRTHSKTHI--RPFPCEQCDEKFKTEKQLERHVK 543

  Fly   647 ARHSHLDANSRLMMQMQ--KFQLETAAAQKAQ----SHNPEQQDNDVAGGAS----TSDVPSGSG 701
            . ||.   ..|.:....  |....|.|..|..    .|:|:||.:.:.....    |........
  Fly   544 T-HSR---TKRPVFSCAECKRNFRTPALLKEHMDEGKHSPKQQRSSMRSAVKIMERTDCAICDKN 604

  Fly   702 FMSTEP------SVAEMQ----YSITPE---------QQEEMVCVPIDEVNNSFFMSH------- 740
            |.|::.      :|.|..    :.:.|.         :.||:|.|.::....|...|.       
  Fly   605 FDSSDTLRRHIRTVHECDPDDIFGVEPHPSKRAKKDIESEEVVPVALNTSAGSLISSQTDGNGVV 669

  Fly   741 YMQAVPMEEDGSGQHIIVFEQPGQNMDMMSIYDQQQVGEPMHESGVPKRPAEENARV-VVVKNNP 804
            ..:.:..|.||:.|.|.:..:....:.:....:.:|:.:   |:||.....:|.|:| .|||...
  Fly   670 VREFLVDEGDGAAQTITLENETYTILPLDGAIEGEQLTD---EAGVKPEAKKEEAQVSPVVKKEQ 731

  Fly   805 TKPI 808
            .|.:
  Fly   732 RKSL 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 6/19 (32%)
C2H2 Zn finger 277..297 CDD:275368 0/19 (0%)
C2H2 Zn finger 431..453 CDD:275368 7/25 (28%)
COG5048 <450..647 CDD:227381 63/196 (32%)
C2H2 Zn finger 469..490 CDD:275368 6/20 (30%)
zf-C2H2 511..533 CDD:278523 7/21 (33%)
C2H2 Zn finger 513..564 CDD:275368 19/50 (38%)
C2H2 Zn finger 541..561 CDD:275368 7/19 (37%)
zf-H2C2_2 555..581 CDD:290200 13/25 (52%)
C2H2 Zn finger 572..592 CDD:275368 6/19 (32%)
zf-H2C2_2 585..609 CDD:290200 11/23 (48%)
zf-C2H2 598..620 CDD:278523 9/21 (43%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:290200 7/24 (29%)
C2H2 Zn finger 628..646 CDD:275368 4/17 (24%)
su(Hw)NP_001247098.1 C2H2 Zn finger 292..313 CDD:275368 4/20 (20%)
COG5048 <312..517 CDD:227381 68/240 (28%)
C2H2 Zn finger 321..341 CDD:275368 3/31 (10%)
zf-C2H2 348..368 CDD:278523 5/19 (26%)
C2H2 Zn finger 350..368 CDD:275368 5/17 (29%)
C2H2 Zn finger 382..402 CDD:275368 6/20 (30%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
zf-H2C2_2 428..451 CDD:290200 12/24 (50%)
C2H2 Zn finger 443..463 CDD:275368 8/22 (36%)
zf-H2C2_2 455..479 CDD:290200 12/24 (50%)
COG5048 <467..620 CDD:227381 42/158 (27%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
zf-H2C2_2 484..508 CDD:290200 11/23 (48%)
C2H2 Zn finger 499..519 CDD:275368 9/19 (47%)
C2H2 Zn finger 525..545 CDD:275368 4/20 (20%)
C2H2 Zn finger 555..572 CDD:275368 4/16 (25%)
C2H2 Zn finger 598..615 CDD:275371 2/16 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446720
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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