DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and CG4820

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster


Alignment Length:374 Identity:82/374 - (21%)
Similarity:127/374 - (33%) Gaps:105/374 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 GSVLQCEFCEYIFADIAELLVHSASHVAERRFECTACDIQMNTAKEASIHFQTDCIFMREAIRSL 421
            |..:..:.|..||......|:.....:       |.|.:|  ..::...|..|||..:...::..
  Fly     9 GKTVVADECLQIFTPAGRKLLQCVRSI-------TNCWLQ--NVQDLPNHICTDCQVLLSQVQKF 64

  Fly   422 N---VTLSRYF----------------------------------VCNVCELKFANTDLLQE--- 446
            .   ..:.:||                                  :.:..::|.....|..|   
  Fly    65 RRRCAKIEKYFARRRRRMNLGEAPAAMEQLRVQQAAAPDPLGIDELMSASDIKIEPIQLQMEEDP 129

  Fly   447 ---------HRCTSFHYFPRLNENGKKLL-LPCDFCDVNFEFA--HDFLAHSEEKHLNKKKREKE 499
                     .:..|:.     |..|:.:| ||.|:.:...|.|  .:..|....|:..|.|.:|.
  Fly   130 QAPYPENQLEQALSYG-----NAPGEDILPLPEDYGEAQTEVATTTNEPAQRRSKNTAKIKSKKH 189

  Fly   500 TRNTGAGRI---------------------RQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQE 543
            |...|...|                     :..:|:.||:.:..:|:|..||..|.|.|||.|  
  Fly   190 TMRVGRKLIHVKVIDDKQPKRIVDRNGPSAKPCICEHCGRQFKDTSNLHVHLLRHTGTKPFEC-- 252

  Fly   544 ENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFY 608
            :.|.:|......|..|..| || |.||.|..||..:.|.|          ...|:|.|.|.|.  
  Fly   253 DQCHQKCYTLHLLRRHQLK-HT-EGPYACTFCGLEYSTNS----------SRVRHEREACKKG-- 303

  Fly   609 RADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARHSHLDANSR 657
            ||...| .:.|..||:.:.|..|...|.:.|:..:||.: .||::...|
  Fly   304 RAPQSK-WEIIKKGERTFHCEVCDLWFLRAGNFTQHINS-SSHIENERR 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368 4/33 (12%)
COG5048 <450..647 CDD:227381 62/220 (28%)
C2H2 Zn finger 469..490 CDD:275368 4/22 (18%)
C2H2 Zn finger 513..564 CDD:275368 18/50 (36%)
C2H2 Zn finger 541..561 CDD:275368 5/19 (26%)
C2H2 Zn finger 572..592 CDD:275368 5/19 (26%)
C2H2 Zn finger 600..620 CDD:275368 6/19 (32%)
zf-H2C2_2 612..637 CDD:463886 7/24 (29%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262 12/74 (16%)
SUF4-like 224..>279 CDD:411020 23/58 (40%)
C2H2 Zn finger 224..244 CDD:411020 7/19 (37%)
C2H2 Zn finger 224..244 CDD:275368 7/19 (37%)
C2H2 Zn finger 252..272 CDD:275368 6/22 (27%)
C2H2 Zn finger 279..297 CDD:275368 6/27 (22%)
C2H2 Zn finger 322..339 CDD:275368 4/16 (25%)
Blue background indicates that the domain is not in the aligned region.

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