DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment topi and CTCF

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster


Alignment Length:669 Identity:140/669 - (20%)
Similarity:213/669 - (31%) Gaps:219/669 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TLAEIEVELDQQLTPDDLQPGATV-----LATNESTGGLERIVSHEELSRFFAVGPAGALPMPTD 69
            |..:.:.||.::|.....:||...     .|||:|..                :.||.:.|..| 
  Fly    97 TTPKKQKELQKKLKQAAAKPGKATRSVVSTATNKSIN----------------LRPAKSTPKAT- 144

  Fly    70 VVVERTLADPAFKQILQEADGKKGFDPQAEQMKIRDFLAGVTSSKMTTEQSVFHGSRSNSSASTV 134
                 |...|                |:.:.:.:|...|....:|.:.                 
  Fly   145 -----TSKPP----------------PEPKAISVRPARAAAAKAKQSA----------------- 171

  Fly   135 NRIKCPTCLVQFDAVAFQNHSCEAKPIEVAVPQQEKPHLVPTVSAP-PAPLSKPASERV----IR 194
              :..|..||                ::|..| :.:|...|.:..| |..|.:...|.|    |.
  Fly   172 --MPPPPALV----------------VKVPAP-RGRPRKNPVIPKPEPMDLERELEELVDEPDIS 217

  Fly   195 ENQVRLRRYIKDEMKYDLATGIESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQT 259
            .....|..|..||...:.||        |...|||..:.:.: .:|:....:.:|..:|.:.|..
  Fly   218 SMVTELSDYTVDEAAVEAAT--------ATLTPNEAEVYEFE-DNATTEDENADKKDVDFVLSNK 273

  Fly   260 SEQPHTIPAAGLHVVVKCNSCGRIFYDPQVAF---------RHGLIHDSEHSTMRQSPMTQVPSN 315
            ..:..|..:...:    .|:.|..:..|...:         ||...||.|            ||.
  Fly   274 EVKLKTASSTSQN----SNASGHKYSCPHCPYTASKKFLITRHSRSHDVE------------PSF 322

  Fly   316 RADFNELLLDGEMLIDNDPAFATSNQNT---NPPKKEMFSSLILGSVLQCEFCEYIFADIAELLV 377
            :....|......:.:.|       :.||   |.|.|             |:.||..|....||:.
  Fly   323 KCSICERSFRSNVGLQN-------HINTHMGNKPHK-------------CKLCESAFTTSGELVR 367

  Fly   378 HSA-SHVAERRFECTACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFANT 441
            |:. .|..|:..:||.|..       ||:..               ..|.|:..|:..|      
  Fly   368 HTRYKHTKEKPHKCTECTY-------ASVEL---------------TKLRRHMTCHTGE------ 404

  Fly   442 DLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVN-FEFAHDFLAHSEEKHLNKKKREKETRNTGA 505
               :.::|..                 |.:...: |:.....:.|:.||                
  Fly   405 ---RPYQCPH-----------------CTYASQDMFKLKRHMVIHTGEK---------------- 433

  Fly   506 GRIRQYLCDICGKSYTQSSHLWQHLRFHQGV-KP-FVCQ--EENCDRKFTIRPDLNDHIRKCHTG 566
                :|.||||...:|||:.|..|...|..| || |.|.  ...|.||    .||..||:..||.
  Fly   434 ----KYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGRK----ADLRVHIKHMHTS 490

  Fly   567 ERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFC 631
            :.|..|..||::......:..|...|.||:.|.|:.|.........|.:|..||..|||:.|..|
  Fly   491 DVPMTCRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQC 555

  Fly   632 TKTFRQRGDRDKHIRARHS 650
            .:.||||....:|:...|:
  Fly   556 PQAFRQRQLLRRHMNLVHN 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 1/19 (5%)
C2H2 Zn finger 277..297 CDD:275368 5/28 (18%)
C2H2 Zn finger 431..453 CDD:275368 3/21 (14%)
COG5048 <450..647 CDD:227381 55/201 (27%)
C2H2 Zn finger 469..490 CDD:275368 4/21 (19%)
zf-C2H2 511..533 CDD:278523 10/21 (48%)
C2H2 Zn finger 513..564 CDD:275368 22/54 (41%)
C2H2 Zn finger 541..561 CDD:275368 7/21 (33%)
zf-H2C2_2 555..581 CDD:290200 10/25 (40%)
C2H2 Zn finger 572..592 CDD:275368 4/19 (21%)
zf-H2C2_2 585..609 CDD:290200 7/23 (30%)
zf-C2H2 598..620 CDD:278523 5/21 (24%)
C2H2 Zn finger 600..620 CDD:275368 4/19 (21%)
zf-H2C2_2 612..637 CDD:290200 10/24 (42%)
C2H2 Zn finger 628..646 CDD:275368 7/17 (41%)
CTCFNP_648109.1 23ISL <116..206 CDD:293226 26/163 (16%)
C2H2 Zn finger 296..316 CDD:275368 3/19 (16%)
COG5048 321..>621 CDD:227381 83/346 (24%)
zf-C2H2 322..344 CDD:278523 3/28 (11%)
C2H2 Zn finger 324..344 CDD:275368 3/26 (12%)
zf-H2C2_2 337..361 CDD:290200 10/43 (23%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 7/41 (17%)
zf-H2C2_2 394..415 CDD:290200 6/46 (13%)
C2H2 Zn finger 409..429 CDD:275368 3/36 (8%)
zf-H2C2_2 422..446 CDD:290200 8/43 (19%)
C2H2 Zn finger 437..457 CDD:275368 9/19 (47%)
C2H2 Zn finger 467..485 CDD:275368 7/21 (33%)
C2H2 Zn finger 496..516 CDD:275370 4/19 (21%)
C2H2 Zn finger 524..544 CDD:275368 4/19 (21%)
zf-H2C2_2 536..561 CDD:290200 10/24 (42%)
C2H2 Zn finger 552..573 CDD:275368 7/20 (35%)
zf-C2H2 587..609 CDD:278523
C2H2 Zn finger 589..609 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.