DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and pita

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:97 Identity:21/97 - (21%)
Similarity:36/97 - (37%) Gaps:26/97 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 PNCGYETPLTENPIDFSELAGVEQSLGKRRMSETNLAGGTRMFPSRSIATPSHSSRG----RRWQ 364
            ||.....|.:..|.||..:...:.:            ..|....:.::|..:.|:.|    .:.:
  Fly   425 PNADCTPPKSTTPPDFGTVVDHQST------------PPTTTTSAAAVAVAAASAVGFAAALKMK 477

  Fly   365 SE--------ADTVNQYPEVEGSNIDDELDEG 388
            :|        ||||:|.....|.  |||.::|
  Fly   478 AESRVLGLGFADTVDQRTAAIGE--DDEEEDG 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368
COG5048 <450..647 CDD:227381
C2H2 Zn finger 469..490 CDD:275368
C2H2 Zn finger 513..564 CDD:275368
C2H2 Zn finger 541..561 CDD:275368
C2H2 Zn finger 572..592 CDD:275368
C2H2 Zn finger 600..620 CDD:275368
zf-H2C2_2 612..637 CDD:463886
C2H2 Zn finger 628..646 CDD:275368
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 20/94 (21%)
C2H2 Zn finger 288..308 CDD:275368
C2H2 Zn finger 316..336 CDD:275368
C2H2 Zn finger 344..364 CDD:275368
C2H2 Zn finger 372..388 CDD:275370
C2H2 Zn finger 400..420 CDD:275368
C2H2 Zn finger 428..448 CDD:275368 4/19 (21%)
C2H2 Zn finger 456..476 CDD:275368 3/19 (16%)
C2H2 Zn finger 486..506 CDD:275368 9/21 (43%)
Blue background indicates that the domain is not in the aligned region.

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