DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and CG8944

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_573065.1 Gene:CG8944 / 32517 FlyBaseID:FBgn0030680 Length:762 Species:Drosophila melanogaster


Alignment Length:473 Identity:97/473 - (20%)
Similarity:163/473 - (34%) Gaps:130/473 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 ECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHTIPAAGLHVVVKCNSCGR----IFYDPQV 289
            ||.....:..:.|.|....|.|.|:.:.|...:..        ..|||..|..|    |:.|...
  Fly   321 ECNRMALEKTNISTLWYFKELHFLNEVYSYNDKMS--------DAVVKETSYRRRFSAIWNDTST 377

  Fly   290 AFRHGLIHDSEHSTMRQSPMTQVPSNRAD-FNELLLDGEMLID----------NDPAFATSNQNT 343
            |....::...:....|..|..:....|.: .:::.::.:.|||          :...|..|.|  
  Fly   378 AKLLSMVKRYQCFYNRFDPDYRSKERRGEGLHQMAIELQQLIDVTTIQISKRISQLRFDYSKQ-- 440

  Fly   344 NPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAE---RRFECTACDIQMNTAKEASI 405
               |.|..:|..||...           ||..|.:...|..:   ..|:|..|...:.|.:|..:
  Fly   441 ---KMERLNSERLGKKF-----------IANYLYYDQMHFMDDDIPPFKCAHCPEIVQTLRELDL 491

  Fly   406 HFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFANTDLLQEHRCTSFHYFPRLNENG-KKLLLPC 469
            |..|.           ..:|...:.||:|.::|.|......|:        :|:..| .::...|
  Fly   492 HMLTH-----------QPSLGGGYYCNICSIQFHNAQEFDNHK--------QLHLGGVTEIKFNC 537

  Fly   470 DFCDVNFEFAHDFLAHSEEKHLNKKKRE--------------------------KETRNTGAGRI 508
            :.|..:|....::     ::||.:...|                          :|:|.:|:.|.
  Fly   538 ELCTASFREKANY-----DEHLRRHNEELFLPSLALNHSIMEGGLGDDEIGVEGEESRGSGSRRK 597

  Fly   509 RQ----------------------------------YLCDICGKSYTQSSHLWQHLRFHQGVKP- 538
            |:                                  |.||:|.:|:....||..|...||..:. 
  Fly   598 RRHAAKATDDMVDDDDRIGGGGGGGSGGGGTDIAKPYGCDVCRRSFATPGHLNAHRIVHQDERER 662

  Fly   539 -FVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEE 602
             :.|....|::.|..|..|.:|::: |.....:.|.:|||.|.:......|:.||...:||.|:.
  Fly   663 CYKCDYPQCNKSFVARNSLFEHLKQ-HYSNEEFKCDICGKTFKSTKNLQNHKQIHDKIKRYVCQI 726

  Fly   603 CGKRFYRADALKNHQRIH 620
            ||..|.:|..|..|:|.|
  Fly   727 CGSAFAQAAGLYLHKRRH 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370 4/19 (21%)
C2H2 Zn finger 277..297 CDD:275370 5/23 (22%)
C2H2 Zn finger 431..453 CDD:275368 6/21 (29%)
COG5048 <450..647 CDD:227381 49/234 (21%)
C2H2 Zn finger 469..490 CDD:275368 3/20 (15%)
C2H2 Zn finger 513..564 CDD:275368 15/52 (29%)
C2H2 Zn finger 541..561 CDD:275368 6/19 (32%)
C2H2 Zn finger 572..592 CDD:275368 6/19 (32%)
C2H2 Zn finger 600..620 CDD:275368 8/19 (42%)
zf-H2C2_2 612..637 CDD:463886 4/9 (44%)
C2H2 Zn finger 628..646 CDD:275368
CG8944NP_573065.1 MADF_DNA_bdg 259..344 CDD:463144 6/22 (27%)
MADF 379..472 CDD:214738 18/108 (17%)
C2H2 Zn finger 476..496 CDD:275368 5/19 (26%)
C2H2 Zn finger 506..526 CDD:275368 6/27 (22%)
C2H2 Zn finger 537..557 CDD:275368 5/24 (21%)
C2H2 Zn finger 636..656 CDD:275368 7/19 (37%)
COG5048 <666..734 CDD:227381 21/68 (31%)
C2H2 Zn finger 666..688 CDD:275368 6/22 (27%)
C2H2 Zn finger 696..716 CDD:275368 6/19 (32%)
C2H2 Zn finger 724..744 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

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