DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and CG11696

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_572731.1 Gene:CG11696 / 32104 FlyBaseID:FBgn0030314 Length:664 Species:Drosophila melanogaster


Alignment Length:434 Identity:96/434 - (22%)
Similarity:145/434 - (33%) Gaps:121/434 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 ATSNQNTN--PPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAERRFECTACDIQMNT 399
            |..|.:|:  |.|:....          |..:||.|::              :.:|..|...:..
  Fly   271 ADDNDDTSEVPVKRSSIK----------EMDDYIAANV--------------KLDCAICAAPLED 311

  Fly   400 AKEASIHFQTD--------CIFMREAIRSLNVTL------SRYFVCNVCELKFANTDLLQEHRCT 450
            ..:...||:.:        |...|...|:|.|..      .:||.|..|...|.|       |.:
  Fly   312 FNDLKRHFRVEHDCTGYVKCCNNRYKKRTLYVDHLHCHKDPQYFSCQSCRKNFLN-------RNS 369

  Fly   451 SFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDI 515
            ...:..|.:...::|:..|..|:.  .||..||.   ..||...|          |..|..:||.
  Fly   370 QVMHMLRFHSQQQELVHQCAICEA--RFAKKFLL---TMHLKGHK----------GTERPEVCDT 419

  Fly   516 CGKSYTQSSHLWQHL-RFHQG-VKPFVCQEENCDRKF-----------TIRPD------------ 555
            |.|::.....|..|: |.|.. ..|.:|  :.|...|           .:.||            
  Fly   420 CSKTFRTKFELSAHVKRMHAADFTPIIC--DICGTHFRSKANFLIHKKALHPDGPVAEVQCTLCG 482

  Fly   556 --------LNDHIRKCH---TGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYR 609
                    |..|:.: |   .|:..|.||:|.....:.:....|...|...:|::|..|.|.|..
  Fly   483 RWLRDERSLRKHLAR-HDDRDGDTKYRCLLCNAEKSSRAALSSHMRYHHSAKRHKCSLCDKEFKL 546

  Fly   610 ADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARHSHLDANSRLMMQMQ-KFQLETAAAQ 673
            ..||..|...|||...|.|.|||:||:...:...|.:..|    .|..:....| ...:.:.||.
  Fly   547 PRALAEHMATHTGIDLYQCQFCTRTFKSHANMHNHKKKMH----PNDWVRKYSQPSSSITSTAAP 607

  Fly   674 KAQSHNPEQQDNDVA-------------GGASTS--DVPSGSGF 702
            .|..::|.|.....|             ||.:.|  ::|...||
  Fly   608 LAHPNHPNQPAPPAAAPTNLAGHMLPPLGGIAKSLIEIPDTEGF 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368 5/21 (24%)
COG5048 <450..647 CDD:227381 56/232 (24%)
C2H2 Zn finger 469..490 CDD:275368 6/20 (30%)
C2H2 Zn finger 513..564 CDD:275368 16/83 (19%)
C2H2 Zn finger 541..561 CDD:275368 7/50 (14%)
C2H2 Zn finger 572..592 CDD:275368 4/19 (21%)
C2H2 Zn finger 600..620 CDD:275368 7/19 (37%)
zf-H2C2_2 612..637 CDD:463886 13/24 (54%)
C2H2 Zn finger 628..646 CDD:275368 7/17 (41%)
CG11696NP_572731.1 zf-AD 2..81 CDD:462262
C2H2 Zn finger 332..349 CDD:275368 4/16 (25%)
C2H2 Zn finger 357..378 CDD:275368 6/27 (22%)
C2H2 Zn finger 388..408 CDD:275368 8/24 (33%)
C2H2 Zn finger 417..438 CDD:275368 7/20 (35%)
C2H2 Zn finger 447..465 CDD:275368 3/19 (16%)
C2H2 Zn finger 478..498 CDD:275368 2/20 (10%)
C2H2 Zn finger 509..529 CDD:275368 4/19 (21%)
zf-H2C2_2 521..545 CDD:463886 6/23 (26%)
C2H2 Zn finger 537..557 CDD:275368 7/19 (37%)
C2H2 Zn finger 565..583 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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