DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and CG11398

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_569896.1 Gene:CG11398 / 31070 FlyBaseID:FBgn0040366 Length:329 Species:Drosophila melanogaster


Alignment Length:379 Identity:93/379 - (24%)
Similarity:143/379 - (37%) Gaps:67/379 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 EYIFADIAELLVHSASHVAERRFECTACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRYFV 430
            :|..|:|..||.|:   ..:........::|.....|.|.|.|..               |..||
  Fly     5 QYKEAEILALLPHT---YEDEELSLNTEELQFEELNERSQHQQGG---------------SPSFV 51

  Fly   431 CNVCELKFANTDLLQEHRCTSFHYFPRLNENGKKLLLP-----CDFCDVNFEFAHDFLAHSEEKH 490
            |..|...|...:.|..||.|  |.:    :.|::  .|     ||.|...|: .|:.|.    .|
  Fly    52 CRRCPALFLTREELAAHRPT--HRY----QGGQQ--TPASEHACDACGRVFQ-KHNALV----DH 103

  Fly   491 LNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHLWQHLR-FHQGVKPFVCQEENCDRKFTIRP 554
            :|           ....:|.|.|..|...:.|.|:...||: .|:.|....|.|..|.::|..|.
  Fly   104 MN-----------AHNDVRNYPCPECPARFVQRSNRECHLKNVHRKVYLHSCPEPGCKKRFQQRR 157

  Fly   555 DLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRI 619
            :.:.|::..|..||..:|..|..||.....:.:|...|...:.|.|..|||.|.|.:....|..:
  Fly   158 ECDQHVKTVHQNERNLVCDTCSARFSHPVNYRKHLASHGSAKSYGCPICGKLFGRPENRDVHLFV 222

  Fly   620 HTGEKPYSCLFCTKTFRQRGDRDKHIRARHSHLDANSRLMMQMQKFQLETAAAQKAQ-SHNPEQQ 683
            |:..|.|.|..|...:.:|....:|..|...|   |..::.|..:|....||..::| |...|.|
  Fly   223 HSICKAYICSVCGADYMRRNQLIRHGLASGHH---NDPIVRQKPQFSPALAAKNRSQRSAIDESQ 284

  Fly   684 DNDV--AGGASTSDVPSGSGFMSTEPSVAEMQYSITPEQQEEMVCVPIDEVNNS 735
            |.::  ..|....|   .:|::...      |:|.|    .:|..:..::.|.|
  Fly   285 DEELQWLKGVDALD---SAGYLENS------QFSNT----GKMTAIFAEDENES 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368 7/21 (33%)
COG5048 <450..647 CDD:227381 52/202 (26%)
C2H2 Zn finger 469..490 CDD:275368 6/20 (30%)
C2H2 Zn finger 513..564 CDD:275368 14/51 (27%)
C2H2 Zn finger 541..561 CDD:275368 6/19 (32%)
C2H2 Zn finger 572..592 CDD:275368 5/19 (26%)
C2H2 Zn finger 600..620 CDD:275368 7/19 (37%)
zf-H2C2_2 612..637 CDD:463886 6/24 (25%)
C2H2 Zn finger 628..646 CDD:275368 4/17 (24%)
CG11398NP_569896.1 C2H2 Zn finger 52..72 CDD:275368 7/21 (33%)
C2H2 Zn finger 87..107 CDD:275368 8/35 (23%)
C2H2 Zn finger 115..136 CDD:275368 6/20 (30%)
C2H2 Zn finger 144..165 CDD:275368 6/20 (30%)
C2H2 Zn finger 175..195 CDD:275368 5/19 (26%)
C2H2 Zn finger 203..223 CDD:275368 7/19 (37%)
C2H2 Zn finger 231..247 CDD:275368 3/15 (20%)
Blue background indicates that the domain is not in the aligned region.

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