DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and mnm-2

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_509256.2 Gene:mnm-2 / 182489 WormBaseID:WBGene00003380 Length:249 Species:Caenorhabditis elegans


Alignment Length:333 Identity:74/333 - (22%)
Similarity:115/333 - (34%) Gaps:112/333 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 STMRQSPM----TQVPSNRADFNELLLDGEMLIDND---PAFATSNQNTNPPKKE------MFSS 353
            |.:.:.|.    |:......|..|.|...|:..:||   .:.::|..:...||.:      :||:
 Worm    14 SLLNKKPKEELETEEEDEEEDEEEELSSSEVTSENDMETESASSSASSVGQPKPDFSAFHKIFSN 78

  Fly   354 LILGSVLQCEFCEYIFADIAELLVHSASHVAERRFECTACDIQMNTAKEASIHFQTDCIFMREAI 418
            |                |.|:|..                 ::.|...:..: |:.:|.|..|..
 Worm    79 L----------------DFAKLAA-----------------VKRNGHHQPML-FRPECFFPLELS 109

  Fly   419 RSLNVTLSRYFVCNVCELKFANTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFL 483
            :.|:: :.:.|..||                        |...|..|.||  |..:....|    
 Worm   110 KHLHL-VQQTFQMNV------------------------LQNLGHTLPLP--FVPMLKNVA---- 143

  Fly   484 AHSEEKHLNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQEENCDR 548
              ..:|.|| .||.....::..|.:::|.||:|.|::::|:.|..|.|.|.|.|||.|:.     
 Worm   144 --PAQKRLN-NKRASYVDHSQKGNLKKYRCDVCDKTFSRSNTLITHKRIHTGEKPFKCEH----- 200

  Fly   549 KFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADAL 613
                                      ||:.|.......:|||.|...:.|.|..|.|.|.||..|
 Worm   201 --------------------------CGRAFRQPGNLTRHRLTHTTVKPYVCGLCDKAFNRASNL 239

  Fly   614 KNHQRIHT 621
            ..|.|.||
 Worm   240 HTHMRTHT 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368 2/21 (10%)
COG5048 <450..647 CDD:227381 47/172 (27%)
C2H2 Zn finger 469..490 CDD:275368 2/20 (10%)
C2H2 Zn finger 513..564 CDD:275368 14/50 (28%)
C2H2 Zn finger 541..561 CDD:275368 1/19 (5%)
C2H2 Zn finger 572..592 CDD:275368 6/19 (32%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:463886 5/10 (50%)
C2H2 Zn finger 628..646 CDD:275368
mnm-2NP_509256.2 COG5048 <73..>226 CDD:227381 51/251 (20%)
SFP1 <166..247 CDD:227516 32/111 (29%)
C2H2 Zn finger 170..190 CDD:275368 8/19 (42%)
zf-H2C2_2 183..207 CDD:463886 12/54 (22%)
C2H2 Zn finger 198..218 CDD:275368 7/50 (14%)
C2H2 Zn finger 226..246 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.

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