DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and LOC116411620

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:XP_031760140.1 Gene:LOC116411620 / 116411620 -ID:- Length:428 Species:Xenopus tropicalis


Alignment Length:498 Identity:133/498 - (26%)
Similarity:191/498 - (38%) Gaps:126/498 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 EAKPIEVAVPQQEKP----HLVP--TVSAPPAPLSKPASERVIRENQVRLRRYIKDEM-KYDLAT 214
            ||..:.:.| ::|.|    |:.|  :.:|||.....|.:|.:    |::     |:|. ..|..|
 Frog     8 EAGMLVIKV-KEEAPDCADHVTPMGSSAAPPTDGGSPEAEML----QIK-----KEEPDPEDHQT 62

  Fly   215 GIESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHTIPAAGLHVVVKCNS 279
            .:|||......|.||       .:.:||    .:|...::.||.:|:...||....     .|.:
 Frog    63 PMESSAAPLTDGDNE-------KLQSSG----AQKLQTNMEPSTSSDNCATISPPS-----DCAN 111

  Fly   280 CGRIFYDPQVAFRHGLIHDSEHSTMRQSPMTQVPSNRADFNELLLDGEMLIDNDPAFATSNQNTN 344
            ||                  :.|.:.....||                      |...|.:|...
 Frog   112 CG------------------QSSDLLAHTCTQ----------------------PGNVTDSQTRR 136

  Fly   345 PPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAERRFECTACDIQMNTAKEASIHFQT 409
            .|||:.||         |..|...|.....|..|...|:..:.|.||.|............|..|
 Frog   137 EPKKKGFS---------CSECGKCFKYRKYLHQHQMVHLKLKPFPCTECGKGFRFKSSLHKHQMT 192

  Fly   410 DCIFMREAIRSLNVTLSRYFVCNVCELKFA-NTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFCD 473
            .             |..:.|.|..|....: .:||...|          |...|:| ...|..|.
 Frog   193 H-------------TGEKPFTCTECGKGLSYRSDLWSHH----------LVHTGEK-PFTCTECG 233

  Fly   474 VNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHLWQHLRFHQGVKP 538
            ..|         ..:.||    :..|..:||.   :.:.|..|||.:..:|.|.||...|.||||
 Frog   234 KAF---------GNKLHL----KRHEMIHTGE---KPFTCTECGKGFQNNSILQQHRMVHAGVKP 282

  Fly   539 FVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEEC 603
            |.|:|  |.:.|:.:|:|..| :..||..:|:.|..||:.|...|...:||::|.||:.:.|.||
 Frog   283 FTCRE--CGKGFSNKPNLQKH-QMIHTELKPFTCTECGRGFSFKSSLQRHRMVHTGEKPFTCTEC 344

  Fly   604 GKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIR 646
            ||.|.....|::||:|||||||::|..|.|.|..||...:|.|
 Frog   345 GKGFRNKPRLQSHQKIHTGEKPFTCTECGKGFASRGSLMRHHR 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 2/19 (11%)
C2H2 Zn finger 277..297 CDD:275368 3/19 (16%)
C2H2 Zn finger 431..453 CDD:275368 5/22 (23%)
COG5048 <450..647 CDD:227381 69/197 (35%)
C2H2 Zn finger 469..490 CDD:275368 3/20 (15%)
zf-C2H2 511..533 CDD:278523 8/21 (38%)
C2H2 Zn finger 513..564 CDD:275368 21/50 (42%)
C2H2 Zn finger 541..561 CDD:275368 7/19 (37%)
zf-H2C2_2 555..581 CDD:290200 9/25 (36%)
C2H2 Zn finger 572..592 CDD:275368 7/19 (37%)
zf-H2C2_2 585..609 CDD:290200 11/23 (48%)
zf-C2H2 598..620 CDD:278523 9/21 (43%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:290200 14/24 (58%)
C2H2 Zn finger 628..646 CDD:275368 7/17 (41%)
LOC116411620XP_031760140.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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