DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and znf1086

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:XP_017211205.2 Gene:znf1086 / 101882544 ZFINID:ZDB-GENE-141212-233 Length:937 Species:Danio rerio


Alignment Length:555 Identity:141/555 - (25%)
Similarity:215/555 - (38%) Gaps:151/555 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 RKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHTIPAAG----------LHVV 274
            |.:..:.|..||.|.:.|..:|.|..||..|        |.|:|.|....|          :|::
Zfish   422 RIHTGEKPFTCTQCGKSFNRSSSLNEHMMIH--------TGEKPFTCTQCGKSFGRNFDLKIHMM 478

  Fly   275 V-------KCNSCGRIFYDPQVAFRHGLIHDSEHSTMRQSPMTQVPSNRADFNELLLDGEMLIDN 332
            :       :|..||:.|.......:|..||      .|::|.|.....:: |:.           
Zfish   479 IHTGENPFRCTHCGKSFSQSSYLNQHMRIH------TRENPFTCTQCGKS-FHR----------- 525

  Fly   333 DPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAERRFECTAC---- 393
              :.:.:|..|...:::.|:         |..|...|.:.:.|..|...|..|:.|.||.|    
Zfish   526 --SSSLNNHKTIHTREKPFT---------CTQCGKTFNNSSHLYEHMRIHTGEKPFTCTQCGKSF 579

  Fly   394 DIQMNTAKEASIHFQ------TDCIFMREAIRSLNV-----TLSRYFVCNVCELKFANTDLLQEH 447
            .:..|..:...||.:      |.|........|||:     |..:.|.|..|...|:....|..|
Zfish   580 SLSSNLNRHMRIHTREKPFTCTQCGKSFICSSSLNLHMRIHTGEKPFSCKQCGKSFSQKPNLDVH 644

  Fly   448 -------------RC-------TSFHYFPRLNENGKKLLLPCDFCDVNFEFAHD----FLAHSEE 488
                         :|       .||....|::...:.  ..|..|..:|..|.:    ...|:.|
Zfish   645 MRVHTGEKPYTCEQCGKSFSQKQSFKTHMRIHTGERP--YTCQQCGKSFRHARNLDVHMRIHTGE 707

  Fly   489 K-------------------HLNKKKREK----ETRNTGAGRI-------------RQYLCDICG 517
            |                   |:....|||    |......|::             :.:.|..||
Zfish   708 KPFSCKQCRKSFSKKLNLIAHMRVHTREKPYTCEQCGKSLGKVSLLTIHMRIHTGEKPFTCTQCG 772

  Fly   518 KSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTG 582
            ||::.|:||.:|:|.|.|.|||.|.:  |.:.|.....||:|:| .||||:|:.|:.|||.|...
Zfish   773 KSFSSSTHLNEHIRIHTGEKPFTCTQ--CAKSFNRSEHLNEHMR-THTGEKPFTCIQCGKIFSIS 834

  Fly   583 SVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIR- 646
            |...:|..||.||:.:.|.:|||.|.::.:||.|.||||||||::|..|.|:|.|.....:|:| 
Zfish   835 SSLNRHMRIHTGEKPFTCTQCGKSFSQSSSLKEHMRIHTGEKPFTCTQCWKSFSQSSCLKEHMRI 899

  Fly   647 ----------------ARHSHLDANSRLMMQMQKF 665
                            .|.|||:.:.|:..:.:.|
Zfish   900 HTGEKPFTCTQCEKSFTRSSHLNRHMRIHTREKPF 934

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 8/19 (42%)
C2H2 Zn finger 277..297 CDD:275368 5/19 (26%)
C2H2 Zn finger 431..453 CDD:275368 7/41 (17%)
COG5048 <450..647 CDD:227381 77/253 (30%)
C2H2 Zn finger 469..490 CDD:275368 7/43 (16%)
zf-C2H2 511..533 CDD:278523 10/21 (48%)
C2H2 Zn finger 513..564 CDD:275368 22/50 (44%)
C2H2 Zn finger 541..561 CDD:275368 6/19 (32%)
zf-H2C2_2 555..581 CDD:290200 14/25 (56%)
C2H2 Zn finger 572..592 CDD:275368 7/19 (37%)
zf-H2C2_2 585..609 CDD:290200 10/23 (43%)
zf-C2H2 598..620 CDD:278523 9/21 (43%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:290200 15/24 (63%)
C2H2 Zn finger 628..646 CDD:275368 6/17 (35%)
znf1086XP_017211205.2 C2H2 Zn finger 68..88 CDD:275368
zf-H2C2_2 80..105 CDD:316026
C2H2 Zn finger 96..116 CDD:275368
COG5048 120..532 CDD:227381 28/137 (20%)
C2H2 Zn finger 124..144 CDD:275368
C2H2 Zn finger 152..172 CDD:275368
C2H2 Zn finger 180..200 CDD:275368
C2H2 Zn finger 208..228 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 264..284 CDD:275368
C2H2 Zn finger 292..312 CDD:275368
C2H2 Zn finger 320..340 CDD:275368
C2H2 Zn finger 348..368 CDD:275368
C2H2 Zn finger 376..396 CDD:275368
C2H2 Zn finger 404..424 CDD:275368 1/1 (100%)
C2H2 Zn finger 432..452 CDD:275368 8/19 (42%)
C2H2 Zn finger 460..480 CDD:275368 2/19 (11%)
C2H2 Zn finger 488..508 CDD:275368 5/19 (26%)
C2H2 Zn finger 516..536 CDD:275368 3/33 (9%)
COG5048 522..936 CDD:227381 114/441 (26%)
C2H2 Zn finger 544..564 CDD:275368 5/19 (26%)
C2H2 Zn finger 572..592 CDD:275368 4/19 (21%)
C2H2 Zn finger 600..620 CDD:275368 5/19 (26%)
C2H2 Zn finger 628..648 CDD:275368 5/19 (26%)
C2H2 Zn finger 656..676 CDD:275368 4/19 (21%)
C2H2 Zn finger 684..704 CDD:275368 4/19 (21%)
C2H2 Zn finger 712..732 CDD:275368 1/19 (5%)
C2H2 Zn finger 740..760 CDD:275368 2/19 (11%)
C2H2 Zn finger 768..788 CDD:275368 10/19 (53%)
C2H2 Zn finger 796..816 CDD:275368 7/22 (32%)
C2H2 Zn finger 824..844 CDD:275368 7/19 (37%)
C2H2 Zn finger 852..872 CDD:275368 9/19 (47%)
C2H2 Zn finger 880..900 CDD:275368 7/19 (37%)
C2H2 Zn finger 908..928 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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