DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and znf524

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:XP_017950969.1 Gene:znf524 / 101734696 -ID:- Length:441 Species:Xenopus tropicalis


Alignment Length:445 Identity:95/445 - (21%)
Similarity:154/445 - (34%) Gaps:158/445 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 IFYDPQVAFRHGLIHDSE----HSTMRQS----PMTQ-VPSNRADFNELLL-------------D 325
            :|..||...::.   ||.    .|..|::    |:.| :|.|.....|.::             |
 Frog    46 LFLKPQSLLQYA---DSSRQGLQSRFRENGSTHPILQHLPPNSTSMREDIVFPNFYNHLGFTQHD 107

  Fly   326 G---------------EMLIDNDPAFATS--------NQNTNPPKKEMFSSLILGSVLQCEF--C 365
            |               |::..|...|.|.        .||::.|:::...:..:...|.||:  .
 Frog   108 GPYYGAVSSQWIAAGTELIKLNSEPFTTPLLKPPWSFIQNSSFPERDRMWNPAVKPHLHCEYPPM 172

  Fly   366 EYIFADIAELLVHSASHVAERR-----------------------FECTACDIQMNTAKEASIHF 407
            |.:.:...:.|:.|.|:.::.:                       .....|:     .::.|.|.
 Frog   173 ESVRSMEQDFLMPSVSYTSDAKDRELYQEKINSSINHPSEDPAIGLPLALCE-----PEDFSFHS 232

  Fly   408 QTDCIFMREAIRSLNVTLSRYFVCNVCELKFANTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFC 472
            .::|:       .:|.|:         :|...:.|...|..|.|        |..|.||:  |..
 Frog   233 NSNCL-------PVNGTI---------DLTDPSQDSKDESTCDS--------EENKFLLI--DDR 271

  Fly   473 DVNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRI--------RQYLCDICGKSYTQSSHLWQH 529
            .:.:......|.:|.|              || |.:        |.:.|.:|.:|:...|.|.:|
 Frog   272 GIPYTVFKKDLINSPE--------------TG-GELDEDSQIPKRFHYCPVCFRSFLYLSDLERH 321

  Fly   530 LRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRG 594
            ...|...|||.|:                               ||||.|...|...:|:.||.|
 Frog   322 SITHSEHKPFECK-------------------------------VCGKSFKRSSHLQRHKHIHTG 355

  Fly   595 ERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARH 649
            ||.::|..|.|.|..:..|:.|||:|||||||.|..|...|.:|....:|.:.:|
 Frog   356 ERPFQCIICKKGFRESGELQRHQRVHTGEKPYQCELCHLRFTERNTLRRHTKRKH 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368
C2H2 Zn finger 277..297 CDD:275368 3/13 (23%)
C2H2 Zn finger 431..453 CDD:275368 5/21 (24%)
COG5048 <450..647 CDD:227381 56/204 (27%)
C2H2 Zn finger 469..490 CDD:275368 4/20 (20%)
zf-C2H2 511..533 CDD:278523 6/21 (29%)
C2H2 Zn finger 513..564 CDD:275368 11/50 (22%)
C2H2 Zn finger 541..561 CDD:275368 1/19 (5%)
zf-H2C2_2 555..581 CDD:290200 5/25 (20%)
C2H2 Zn finger 572..592 CDD:275368 7/19 (37%)
zf-H2C2_2 585..609 CDD:290200 10/23 (43%)
zf-C2H2 598..620 CDD:278523 8/21 (38%)
C2H2 Zn finger 600..620 CDD:275368 8/19 (42%)
zf-H2C2_2 612..637 CDD:290200 14/24 (58%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
znf524XP_017950969.1 SFP1 <248..411 CDD:227516 60/219 (27%)
C2H2 Zn finger 305..325 CDD:275368 6/19 (32%)
C2H2 Zn finger 333..353 CDD:275368 8/50 (16%)
C2H2 Zn finger 361..381 CDD:275368 8/19 (42%)
zf-H2C2_2 373..397 CDD:372612 13/23 (57%)
C2H2 Zn finger 389..410 CDD:275368 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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