DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and LOC101731242

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:XP_017952890.2 Gene:LOC101731242 / 101731242 -ID:- Length:696 Species:Xenopus tropicalis


Alignment Length:748 Identity:167/748 - (22%)
Similarity:252/748 - (33%) Gaps:256/748 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VSGEYTLAEIEVELDQQLTPDDLQPGATVLATNESTGGLERIVSHEELSRFFAVGPAGALPMPTD 69
            :.|||.        |::..|.||  |.|:...||.:                .:|..||     |
 Frog   105 LDGEYE--------DKREIPADL--GGTLCYNNEPS----------------KIGAEGA-----D 138

  Fly    70 VVVERTLADPAFKQILQEADGKKGFDPQAEQMKIRDFLAGVTSSKMTTEQSVFHGSRSNSSASTV 134
            ...:|.|.:|...              .|||..:.:   |:.....:.|:    |::|:.|    
 Frog   139 FCADRNLTNPEIS--------------PAEQPPLAN---GIKEEAASWEE----GNQSDCS---- 178

  Fly   135 NRIKCPTCLVQFDAVAFQNHSCEAKPIEVAVPQQEKPHLVPTVSAPPAPLSKPASERVIRENQVR 199
                                         .:|..|:.....|    |.|:   .:....:.:.|.
 Frog   179 -----------------------------IIPLTEQRQGTDT----PTPI---MAHTFNKSSDVN 207

  Fly   200 LRRYIKDEMKYDLATGIESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPH 264
            ..|:  |:..:..|.......|:..:|...|..|.:.|..:...:||:..|        |..:|.
 Frog   208 HNRF--DKNIHTNALHAAHLAKHPTQGTYNCPTCHKPFTKSYDFIRHLRTH--------TGVKPF 262

  Fly   265 TIPAAGLHVVVKCNSCGRIF---YDPQVAFR-HG-------------------LIHD-------S 299
            :           |:.||:.|   ::..|..| |.                   .:||       |
 Frog   263 S-----------CSECGKSFTRRFNLNVHRRTHSGNIPQGQQQTAADSVKGATALHDGGNQSGCS 316

  Fly   300 EHSTMRQSPMTQVPS-------------------------------NRAD--FNELLLDGEMLID 331
            .:|.|:|:..|..|:                               |::|  .|.|.   |.:..
 Frog   317 LNSFMKQTWGTDTPTPVMGSSLGNSSADNSISSGMRGSAPALWKEGNQSDCSINPLT---EQIQG 378

  Fly   332 ND---PAFATS---------------NQNTN----PPKKEMFSSLILGSVLQCEFCEYIFADIAE 374
            .|   |....|               |.|:|    .|.|.:.|:        .:.|.:.|.:..:
 Frog   379 TDTPTPIMGCSLSNSSAETKTYECDKNINSNGSHESPVKNLKST--------SDECHFAFTNRRD 435

  Fly   375 LLVHSASHVAERRFECTACDIQMNTAKEASIH----------FQTDC--IFMREAIRSLNV---T 424
            |:.|..:|..|:.|.|..|........:.::|          ..:||  .|...|..:.:|   |
 Frog   436 LVRHERTHTGEKPFPCPVCGKCFARCSDLNVHKGVHSGEKPFCCSDCGKCFTHRANLAAHVKTHT 500

  Fly   425 LSRYFVCNVCELKFANTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEK 489
            ..:.|.|:.|...|.....|:.|         ::...|:| ...|..|..:|....:|.||.   
 Frog   501 DLKPFSCDKCGKCFKRRSHLKGH---------QIVHTGEK-PFSCSECGKSFAKRSNFTAHC--- 552

  Fly   490 HLNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRP 554
                     .|...|    :.:.|..|||.:...:....|.|.|.|..||.|.|  |.:.||.|.
 Frog   553 ---------STHTDG----KTFTCSDCGKGFKYRADFKVHQRLHLGENPFPCSE--CGKSFTRRS 602

  Fly   555 DLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRI 619
            .|..|: |.||||:|:.|..|||.|...|....||.:|.|||.:.|.||||.|.:...|..|:|.
 Frog   603 HLIVHL-KTHTGEKPFTCPECGKSFTQRSDMNIHRRLHTGERPFPCPECGKCFSQFSYLNVHRRT 666

  Fly   620 HTGEKPYSCLFCTKTFRQRGDRDKHIRARHSHL 652
            ||||:|:||..|.|.|:||...:.|   |..||
 Frog   667 HTGERPFSCDECGKCFKQRTHLNVH---RKIHL 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 5/19 (26%)
C2H2 Zn finger 277..297 CDD:275368 7/42 (17%)
C2H2 Zn finger 431..453 CDD:275368 5/21 (24%)
COG5048 <450..647 CDD:227381 68/196 (35%)
C2H2 Zn finger 469..490 CDD:275368 6/20 (30%)
zf-C2H2 511..533 CDD:278523 6/21 (29%)
C2H2 Zn finger 513..564 CDD:275368 19/50 (38%)
C2H2 Zn finger 541..561 CDD:275368 8/19 (42%)
zf-H2C2_2 555..581 CDD:290200 13/25 (52%)
C2H2 Zn finger 572..592 CDD:275368 8/19 (42%)
zf-H2C2_2 585..609 CDD:290200 12/23 (52%)
zf-C2H2 598..620 CDD:278523 9/21 (43%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:290200 13/24 (54%)
C2H2 Zn finger 628..646 CDD:275368 7/17 (41%)
LOC101731242XP_017952890.2 KRAB_A-box 64..>93 CDD:413388
COG5048 233..636 CDD:227381 99/461 (21%)
C2H2 Zn finger 236..256 CDD:275368 5/19 (26%)
C2H2 Zn finger 264..284 CDD:275368 6/19 (32%)
C2H2 Zn finger 424..443 CDD:275368 4/18 (22%)
C2H2 Zn finger 451..471 CDD:275368 3/19 (16%)
C2H2 Zn finger 479..499 CDD:275368 5/19 (26%)
C2H2 Zn finger 507..527 CDD:275368 5/28 (18%)
C2H2 Zn finger 535..555 CDD:275368 6/31 (19%)
C2H2 Zn finger 563..583 CDD:275368 6/19 (32%)
C2H2 Zn finger 591..611 CDD:275368 9/22 (41%)
C2H2 Zn finger 619..639 CDD:275368 8/19 (42%)
zf-H2C2_2 635..656 CDD:404364 12/20 (60%)
C2H2 Zn finger 647..667 CDD:275368 9/19 (47%)
zf-H2C2_2 659..684 CDD:404364 13/24 (54%)
C2H2 Zn finger 675..695 CDD:275368 8/22 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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