DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and LOC100496074

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:XP_002938649.3 Gene:LOC100496074 / 100496074 XenbaseID:XB-GENE-29082983 Length:385 Species:Xenopus tropicalis


Alignment Length:216 Identity:75/216 - (34%)
Similarity:99/216 - (45%) Gaps:21/216 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   481 DFLAHSEEKHLNKKKREKETRNTGAG--------------RIRQYLCDICGKSYTQSSHLWQHLR 531
            |....:|.|.:.|:...:..|:.|..              :.|.|:|.:||||:..:|.|.:|:|
 Frog   176 DIFEKNEPKSIPKEGPNESERDEGLACTNPVKMDQKPSVPKERLYICSVCGKSFGGNSLLVRHMR 240

  Fly   532 FHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGER 596
            .|.|.|||.|  .:||:.|..:..|..|:| .||||:||.|.||.|.|...|....|..||.|||
 Frog   241 IHTGEKPFAC--NHCDKSFNDKSYLLRHLR-THTGEKPYSCSVCLKCFSQNSSVIAHMRIHTGER 302

  Fly   597 RYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARHSHLDANSRLMMQ 661
            .::|.||.|||........|.|.|:|||||.|..|.|.|.|......|:|.   |..........
 Frog   303 PFQCPECEKRFSDKSYFVRHMRTHSGEKPYKCSHCEKCFSQTSSLTSHMRI---HTGEKPYKCSD 364

  Fly   662 MQK-FQLETAAAQKAQSHNPE 681
            ..| |...::.|...:.|.||
 Frog   365 CGKCFSQNSSLALHKRLHKPE 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368
COG5048 <450..647 CDD:227381 67/179 (37%)
C2H2 Zn finger 469..490 CDD:275368 2/8 (25%)
C2H2 Zn finger 513..564 CDD:275368 21/50 (42%)
C2H2 Zn finger 541..561 CDD:275368 6/19 (32%)
C2H2 Zn finger 572..592 CDD:275368 7/19 (37%)
C2H2 Zn finger 600..620 CDD:275368 8/19 (42%)
zf-H2C2_2 612..637 CDD:463886 12/24 (50%)
C2H2 Zn finger 628..646 CDD:275368 6/17 (35%)
LOC100496074XP_002938649.3 KRAB 10..66 CDD:214630
COG5048 <203..373 CDD:227381 65/175 (37%)
C2H2 Zn finger 222..242 CDD:275368 9/19 (47%)
C2H2 Zn finger 250..270 CDD:275368 7/22 (32%)
C2H2 Zn finger 278..298 CDD:275368 7/19 (37%)
C2H2 Zn finger 306..326 CDD:275368 8/19 (42%)
C2H2 Zn finger 334..354 CDD:275368 7/22 (32%)
C2H2 Zn finger 362..382 CDD:275368 3/19 (16%)
Blue background indicates that the domain is not in the aligned region.

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