DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and egr3

DIOPT Version :10

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:XP_002932749.1 Gene:egr3 / 100488713 XenbaseID:XB-GENE-976448 Length:380 Species:Xenopus tropicalis


Alignment Length:128 Identity:25/128 - (19%)
Similarity:45/128 - (35%) Gaps:46/128 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 DDSYNWEETVCLNIIMQQIDFYVTCAVCTKTGPQNLQII-------RKNCQRVFPSPSRRRMDSK 196
            |..:.|:|...|.:|:...::           |.||.::       ..:|..:.||         
 Frog    15 DSVFIWKEPFGLVLIIAPWNY-----------PLNLTLVLLVGALAAGSCVVLKPS--------- 59

  Fly   197 GENEEITYPKLYFAIDGFEEVFNDVIVRDGECVCVELVARDRQKT-------RESVVFLGSIR 252
                ||:        .|.|:|..:|:.:..:..|..:|....|:|       .:.:.|.||.|
 Frog    60 ----EIS--------QGTEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPR 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370 5/26 (19%)
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368
COG5048 <450..647 CDD:227381
C2H2 Zn finger 469..490 CDD:275368
C2H2 Zn finger 513..564 CDD:275368
C2H2 Zn finger 541..561 CDD:275368
C2H2 Zn finger 572..592 CDD:275368
C2H2 Zn finger 600..620 CDD:275368
zf-H2C2_2 612..637 CDD:463886
C2H2 Zn finger 628..646 CDD:275368
egr3XP_002932749.1 DUF3446 83..160 CDD:463400 7/28 (25%)
SFP1 <238..350 CDD:227516
C2H2 Zn finger 274..296 CDD:275368
COG5048 300..>352 CDD:227381
C2H2 Zn finger 304..324 CDD:275368
C2H2 Zn finger 332..352 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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