DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and znf1077

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001108580.1 Gene:znf1077 / 100141492 ZFINID:ZDB-GENE-080218-11 Length:332 Species:Danio rerio


Alignment Length:360 Identity:92/360 - (25%)
Similarity:138/360 - (38%) Gaps:50/360 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 EMLIDNDPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAERRFECT 391
            |...|..|.......:...|:|.  .|....:.|||..|   |.....|.||...|..::.:.|.
Zfish    23 ETTTDEKPTLTEKTSSCGGPRKS--KSACNFTCLQCGNC---FTRKHNLQVHMKVHTGQKPYSCP 82

  Fly   392 ACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFANTDLLQEHRCTSFHYFP 456
            .|...........:|.:|.             |..|.:.|..|..:|..|....:|.        
Zfish    83 QCGKSFKQNGYLKVHMRTH-------------TGERCYTCQQCGQRFYTTGNFAQHM-------- 126

  Fly   457 RLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDICGKSYT 521
            |::...:.  ..|..|..:...:.:..||.....:.|                .|.|..||||:.
Zfish   127 RIHTGERP--YTCLQCGKSLYQSANLAAHMRIHTVEK----------------PYSCIQCGKSFK 173

  Fly   522 QSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFY 586
            |:|.|..|:|.|...:.|.|.:  |.:.|..:.||..|.| .||||:||.|..|||||...|...
Zfish   174 QNSTLEAHIRAHNDGRIFTCPQ--CGKSFAQKQDLEIHTR-IHTGEKPYTCTECGKRFRFKSTLN 235

  Fly   587 QHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARHSH 651
            ||.:.|.||:.:.|.:||:.|....:|.||..:|||...::|..|.||..::.....|::   :|
Zfish   236 QHMISHTGEKPFTCAQCGRSFTTKSSLMNHMNVHTGTIVFTCDRCGKTLTRKDSIKNHMK---TH 297

  Fly   652 LDANSRLMMQMQKFQLETAAAQKAQSHNPEQQDND 686
            .....|.....:.|:.:.:.....:.||.||...:
Zfish   298 SVERFRCSECGKGFKSKRSLNSHMKLHNGEQSSQN 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368
C2H2 Zn finger 277..297 CDD:275368
C2H2 Zn finger 431..453 CDD:275368 5/21 (24%)
COG5048 <450..647 CDD:227381 59/196 (30%)
C2H2 Zn finger 469..490 CDD:275368 4/20 (20%)
zf-C2H2 511..533 CDD:278523 11/21 (52%)
C2H2 Zn finger 513..564 CDD:275368 19/50 (38%)
C2H2 Zn finger 541..561 CDD:275368 6/19 (32%)
zf-H2C2_2 555..581 CDD:290200 16/25 (64%)
C2H2 Zn finger 572..592 CDD:275368 9/19 (47%)
zf-H2C2_2 585..609 CDD:290200 9/23 (39%)
zf-C2H2 598..620 CDD:278523 7/21 (33%)
C2H2 Zn finger 600..620 CDD:275368 7/19 (37%)
zf-H2C2_2 612..637 CDD:290200 10/24 (42%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
znf1077NP_001108580.1 C2H2 Zn finger 53..73 CDD:275368 8/22 (36%)
zf-H2C2_2 65..90 CDD:290200 6/24 (25%)
C2H2 Zn finger 81..101 CDD:275368 3/19 (16%)
C2H2 Zn finger 109..129 CDD:275368 6/27 (22%)
C2H2 Zn finger 137..157 CDD:275368 4/19 (21%)
zf-H2C2_2 149..174 CDD:290200 9/40 (23%)
COG5048 <161..320 CDD:227381 57/180 (32%)
C2H2 Zn finger 165..185 CDD:275368 10/19 (53%)
CpXC 192..>241 CDD:291051 22/51 (43%)
C2H2 Zn finger 193..213 CDD:275368 7/22 (32%)
C2H2 Zn finger 221..241 CDD:275368 9/19 (47%)
zf-H2C2_2 234..258 CDD:290200 9/23 (39%)
C2H2 Zn finger 249..269 CDD:275368 7/19 (37%)
C2H2 Zn finger 277..297 CDD:275368 5/22 (23%)
C2H2 Zn finger 304..324 CDD:275368 1/19 (5%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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