DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Whamy and Was

DIOPT Version :9

Sequence 1:NP_001036699.1 Gene:Whamy / 41198 FlyBaseID:FBgn0037750 Length:630 Species:Drosophila melanogaster
Sequence 2:XP_038955700.1 Gene:Was / 317371 RGDID:1563567 Length:503 Species:Rattus norvegicus


Alignment Length:518 Identity:122/518 - (23%)
Similarity:160/518 - (30%) Gaps:217/518 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 PPAVRPPPHYADN-------------VSINASLDGMKSSSSSNSLDRYLGAPPSVALAGPSFATS 179
            ||.   |||...:             |:::.....:.||       ||.|.|    ..||. .|.
  Rat   175 PPV---PPHPGGDHGGPSGGPLSLGLVTVDIQNPDITSS-------RYRGLP----APGPG-PTD 224

  Fly   180 VLVSSKG--SKYEISGPVNFQHVSGDVTRDRTRNAFDL-NADPNDKVLRKYMMERGITEADISDM 241
            ...|.|.  ||.:|..|..|:||| .|..| .:|.||: |.||:   ||......||:||.::|.
  Rat   225 KKRSGKKKISKADIGAPSGFKHVS-HVGWD-PQNGFDVNNLDPD---LRSLFSRAGISEAQLTDA 284

  Fly   242 RRQEVIKKIIHSNFTWMPPKSDLQAQPKVQDHARPLLYATISTNNQITPPPSPPPPPIATISRPT 306
            ...::|...|.........:.:::.|                      .||.|||......|:|.
  Rat   285 ETSKLIYDFIEDQGGLEAVRQEMRRQ----------------------EPPPPPPCRGGGGSQPL 327

  Fly   307 EAPNFSNYASLTSRFVDISDMDLPAPTPAAPTPFQPAEVGSVIPVQVQPQQSVKPKVPPPPSAVM 371
            ..|..||...                  ..|.|  |..:|.               .||||:.  
  Rat   328 RPPVGSNKGR------------------CGPLP--PVPMGG---------------APPPPTP-- 355

  Fly   372 AKNTHGYPAAIDIRQVRPSVAPKVANETYATISPQRKVGSMRVPPPAPPKPTIVPHTNSTISNGS 436
                                                     |||||.                  
  Rat   356 -----------------------------------------RVPPPP------------------ 361

  Fly   437 LYAVSPVQYAPVAKPAPPAAPAKPTSRSSAVYMTPLSAQKTQISSTPVPVSPPPPTAASVGVPPP 501
                        .:..||                                 ||||.|.....|||
  Rat   362 ------------GRGGPP---------------------------------PPPPPATGRSGPPP 381

  Fly   502 PPAPPAGVPPAPPPMPVFGAGGAPPPPPPPSSGMAGVPPPPPMQKSQPKAVSAASTGGDPRDAFL 566
            ||.|.||.|.||||.|       |||||||....:| |.|||:..:....|..|..||  |.|.|
  Rat   382 PPLPGAGGPLAPPPPP-------PPPPPPPVCPGSG-PAPPPLPPTPVSGVGPAPGGG--RGALL 436

  Fly   567 ESIRQGVKLKKVDQKAATISGIKPRPERKPVTTDFLSELKLGITLRRVKNPADNPYSEESESQ 629
            :.||||::|.|.  ..|..:.:   |:..|..::.|....:.:..:|.|....   |:|.|.|
  Rat   437 DQIRQGIQLNKT--PGAMENSV---PQALPQQSEGLVGALMHVMQKRSKVIHS---SDEGEDQ 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WhamyNP_001036699.1 WH2 558..>580 CDD:280384 11/21 (52%)
WasXP_038955700.1 WH1 36..145 CDD:395450
PBD 237..294 CDD:395634 22/61 (36%)
WH2 <435..449 CDD:425359 7/15 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001481
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.960

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