DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8478 and Sry-delta

DIOPT Version :9

Sequence 1:NP_001163576.1 Gene:CG8478 / 41194 FlyBaseID:FBgn0037746 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster


Alignment Length:463 Identity:83/463 - (17%)
Similarity:143/463 - (30%) Gaps:171/463 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 SIDLTQIDDKENTQPEGCGGDNSTLSSSVDVTANTVK------ANTLKTGDATMDNVSLQEAAKT 191
            ::||:......:.:.|       |||:.|..:..||.      ||.::|      .:.|:..|:.
  Fly     9 AVDLSDTGSSSSMRYE-------TLSAKVPSSQKTVSLVLTHLANCIQT------QLDLKPGARL 60

  Fly   192 PAPSQVYPLS-ANVVLENITEVSNEGVSMLVSPAGAEKEVAHVNE--VVNEVSELIAKALKISAD 253
             .|.....|| .:.::.|:........:.|.....:|.||....|  :|.|| |:....::..||
  Fly    61 -CPRCFQELSDYDTIMVNLMTTQKRLTTQLKGALKSEFEVPESGEDILVEEV-EIPQSDVETDAD 123

  Fly   254 SVKPATSKLKVEAGKKRQSMSSTYSGAALPRPRRS---------------------YLPTTTAET 297
            :...|   |.||..|.::...:......:......                     |..::..|.
  Fly   124 AEADA---LFVELVKDQEESDTEIKREFVDEEEEEDDDDDDEFICEDVDVGDSEALYGKSSDGED 185

  Fly   298 RTYSFKQRMSVVVKTTLNSPARKRSVGGGVSLSRRSCLPVSKLTKS--SIRKSLAVTSVRSPEKI 360
            |                  |.:||        .::.|....|:..|  .::|.::....:.|..|
  Fly   186 R------------------PTKKR--------VKQECTTCGKVYNSWYQLQKHISEEHSKQPNHI 224

  Fly   361 ASKPAKTSTKSIPEKVFSCKNCSTTFRVKSLLDVHMRMHDPVDNGANTLKRLNSNPVAAGVSKNR 425
                              |..|....|.:..|::||.:|:                   |.::.:
  Fly   225 ------------------CPICGVIRRDEEYLELHMNLHE-------------------GKTEKQ 252

  Fly   426 CKFCDKNFALERALHIHLMQNCDKIPPSEKRKLEFTELNHEKKAQLPKIGGTSGINHPMTMPQKP 490
            |::|.|:|:.......|:..:.||                 ||.|..|.|               
  Fly   253 CRYCPKSFSRPVNTLRHMRMHWDK-----------------KKYQCEKCG--------------- 285

  Fly   491 QQRISTIPKLAPSQGTQSMAPPSVKKIPKNVAHAGVYRTPTKTVP--CHICKQSFRSILEFTNHS 553
                     |..||              .|:.:....|...:..|  |.||..||:|...|.:|:
  Fly   286 ---------LRFSQ--------------DNLLYNHRLRHEAEENPIICSICNVSFKSRKTFNHHT 327

  Fly   554 LTVHGNNQ 561
            | :|..|:
  Fly   328 L-IHKENR 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8478NP_001163576.1 zf-C2H2 377..399 CDD:278523 6/21 (29%)
C2H2 Zn finger 379..399 CDD:275368 6/19 (32%)
C2H2 Zn finger 426..444 CDD:275368 5/17 (29%)
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 41/223 (18%)
C2H2 Zn finger 225..245 CDD:275368 6/19 (32%)
C2H2 Zn finger 253..273 CDD:275368 5/19 (26%)
C2H2 Zn finger 281..301 CDD:275368 6/57 (11%)
C2H2 Zn finger 310..327 CDD:275370 7/16 (44%)
zf-C2H2 337..359 CDD:278523
C2H2 Zn finger 339..359 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24409
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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