DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8478 and Neu2

DIOPT Version :9

Sequence 1:NP_001163576.1 Gene:CG8478 / 41194 FlyBaseID:FBgn0037746 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster


Alignment Length:432 Identity:89/432 - (20%)
Similarity:148/432 - (34%) Gaps:111/432 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 DVTANTVKANTLKTGDATMDNVSLQEAAKTPAPSQVYPLSANVVLENITEVSNEGVSMLVSPAGA 226
            |..:||:..:.|:......|.:...|.:     .|.|....:|..|   |..|:|.........|
  Fly    31 DPLSNTICKSCLEDAQNAFDIIETYERS-----HQFYRFLKDVREE---ESENDGSGCSEEVEAA 87

  Fly   227 EKEVAHVNEVVN-----EVSELIAKALKISADSVKPATSKLKVEAGKKRQSMSST----YSGAAL 282
            |:::....:.|:     :::|...||.:....|........:|::..|....|.|    ::.:..
  Fly    88 ERDLQDGADDVDSGNEPDINECDIKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLC 152

  Fly   283 PRP------RRSYLPTTTAE--------TRTYSFKQRMSVVVKTTLNSPARKRSVGGGVSLSRRS 333
            |:.      .::::.|.|.|        .|:::....:    |..:....|:.|:         .
  Fly   153 PKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHL----KAHIQMHERRGSL---------R 204

  Fly   334 CLPVSK--LTKSSIRKSLAVTSVRSPEKIASKPAKTSTKSIPEKVFSCKNCSTTFRVKSLLDVHM 396
            |....|  ||...:::.||                |.|   .|..|.|..||.:|:|:..|.:||
  Fly   205 CPYCQKCFLTSLILKQHLA----------------THT---DETQFKCSQCSKSFQVEHELWMHM 250

  Fly   397 RMHDPVDNGANTLKRLNSNPVAAGVSKNRCKFCDKNFALERALHIHLMQN--CDKIPPSEKRKLE 459
            |:|.         :||.:           |..|.|:|||...|..||.:|  |.:...:...|  
  Fly   251 RVHQ---------ERLFT-----------CGHCSKDFALHAYLKRHLSRNARCSQSSKASAHK-- 293

  Fly   460 FTELNHEKKAQLPKIGGTSGINHPMTMPQKPQQRISTIPKLAPSQGTQSMAPPSVKKIPKNVAHA 524
              .|.|.|..:..|.        |.|...:  ..:||  .|......:.:.....|......||:
  Fly   294 --TLGHSKALKCGKC--------PKTFTDR--SALST--HLKSHTKNKPLLEGPCKSSGSKPAHS 344

  Fly   525 GVYRTPTKTVPCHICKQSFRSILEFTNHSLTVH----GNNQL 562
            ...|.|.|   |..|.::|........| |..|    |.|::
  Fly   345 NAQRKPFK---CSSCPRTFSRKSALLTH-LQTHTGKLGTNRM 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8478NP_001163576.1 zf-C2H2 377..399 CDD:278523 10/21 (48%)
C2H2 Zn finger 379..399 CDD:275368 9/19 (47%)
C2H2 Zn finger 426..444 CDD:275368 8/17 (47%)
Neu2NP_649316.1 zf-AD 1..63 CDD:285071 7/36 (19%)
COG5048 <119..241 CDD:227381 26/153 (17%)
C2H2 Zn finger 121..141 CDD:275368 2/19 (11%)
zf-H2C2_2 133..158 CDD:290200 4/24 (17%)
C2H2 Zn finger 149..169 CDD:275368 1/19 (5%)
zf-H2C2_2 162..185 CDD:290200 4/22 (18%)
C2H2 Zn finger 177..197 CDD:275368 2/23 (9%)
C2H2 Zn finger 205..225 CDD:275368 6/35 (17%)
zf-C2H2_8 206..286 CDD:292531 32/118 (27%)
C2H2 Zn finger 233..253 CDD:275368 9/19 (47%)
C2H2 Zn finger 260..297 CDD:275368 13/40 (33%)
C2H2 Zn finger 303..323 CDD:275368 6/31 (19%)
C2H2 Zn finger 353..373 CDD:275368 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24409
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.