DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snap24 and ric-4

DIOPT Version :9

Sequence 1:NP_524298.1 Gene:Snap24 / 41193 FlyBaseID:FBgn0266720 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_001123033.1 Gene:ric-4 / 179427 WormBaseID:WBGene00004364 Length:234 Species:Caenorhabditis elegans


Alignment Length:209 Identity:116/209 - (55%)
Similarity:150/209 - (71%) Gaps:13/209 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 AEPRTELQELQFKSGQVADESLESTRRMLALMDESKEAGIRTLVALDDQGEQLDRIEEGMDRINA 71
            |:...||:.|.....:...||||||||||||.:|||||||:|||.||||||||:|.|..:|.||.
 Worm    32 ADMSDELKGLNVGIDEKTIESLESTRRMLALCEESKEAGIKTLVMLDDQGEQLERCEGALDTINQ 96

  Fly    72 DMREAEKNLSGMEKCCGICVLPWKKVNIKDDGE-----SAWKANDDGKIVASQPQRVIDERERGG 131
            ||:|||.:|.|||||||:|||||.|.   ||.|     .|||.:|||.:::.||:..:.:...| 
 Worm    97 DMKEAEDHLKGMEKCCGLCVLPWNKT---DDFEKTEFAKAWKKDDDGGVISDQPRITVGDSSMG- 157

  Fly   132 MGAPPQSGYVARITNDAREDEMDENLGQVNSMLGNLRNMALDMGSELENQNKQVDRINAKGDANN 196
                ||.||:.:|||||||||||||:.||::|:|||||||:||.:|:.|||:|:|||:.|..:|.
 Worm   158 ----PQGGYITKITNDAREDEMDENVQQVSTMVGNLRNMAIDMSTEVSNQNRQLDRIHDKAQSNE 218

  Fly   197 IRMDGVNKRANNLL 210
            :|::..||||.||:
 Worm   219 VRVESANKRAKNLI 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snap24NP_524298.1 SNARE_SNAP25N_23N 18..82 CDD:277242 41/63 (65%)
SNAP-25 93..148 CDD:395673 22/59 (37%)
SNARE_SNAP25C 150..208 CDD:277238 34/57 (60%)
ric-4NP_001123033.1 SNARE_SNAP25N_23N 45..107 CDD:277242 41/61 (67%)
SNAP-25 118..170 CDD:279208 22/59 (37%)
SNARE_SNAP25C 172..230 CDD:277238 34/57 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164671
Domainoid 1 1.000 115 1.000 Domainoid score I3775
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I2131
Isobase 1 0.950 - 0 Normalized mean entropy S1520
OMA 1 1.010 - - QHG60093
OrthoDB 1 1.010 - - D1197028at2759
OrthoFinder 1 1.000 - - FOG0000822
OrthoInspector 1 1.000 - - otm14169
orthoMCL 1 0.900 - - OOG6_102919
Panther 1 1.100 - - O PTHR19305
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3593
SonicParanoid 1 1.000 - - X1125
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.890

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