DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3R and psmc1b

DIOPT Version :10

Sequence 1:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001002091.1 Gene:psmc1b / 415181 ZFINID:ZDB-GENE-040625-69 Length:440 Species:Danio rerio


Alignment Length:395 Identity:190/395 - (48%)
Similarity:281/395 - (71%) Gaps:28/395 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PHDLYVLYKKLQMELELIQVQEDYIKEEQRNLKKEFIHAQEEVK--------------RIKAVPL 74
            ||        .|..|:|:  ::|.|| :...:::|||..||::|              .::..|:
Zfish    54 PH--------TQCRLKLL--KQDRIK-DYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPM 107

  Fly    75 VIGQFLEAVDENNGIVASTTGSNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVDLVPPEADSTIS 139
            .:|...|.:|:|:.||:::.||.:||.:||.:|::.|:|..||.|:.:.:.::.::..:.|..::
Zfish   108 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172

  Fly   140 MLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKTMLAK 204
            ::..::.|..:|:||||||.|.|||:|:|||||||.:.|:::||.||:||:|:|.||.|||:|||
Zfish   173 VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAK 237

  Fly   205 AVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTGAD 269
            |||:.|:|:|:||||||.:|||||:||::||:|||:|::::|||:||||||||.|||:|:.:|.:
Zfish   238 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302

  Fly   270 REVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTT 334
            ||:||.:||||||:||||...::||||||||.:||||||:||||:|||||.||||.:.||.:|..
Zfish   303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQI 367

  Fly   335 ITSKMNVGEDVDLEDIIARPDKISNADINAICQEAGMHAVRENRYVVNAKDFEKGYKTSV--RKD 397
            .||:|.|.|||.|:|:|...|.:|.|||.|||.|||:.|:||.|..|..:||:|. |.:|  :|.
Zfish   368 HTSRMTVAEDVSLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENVLYKKQ 431

  Fly   398 EAQHE 402
            |...|
Zfish   432 EGTPE 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 190/395 (48%)
psmc1bNP_001002091.1 PTZ00361 1..440 CDD:185575 190/395 (48%)

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