DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3R and psmc2

DIOPT Version :10

Sequence 1:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_989155.1 Gene:psmc2 / 394760 XenbaseID:XB-GENE-1000016 Length:433 Species:Xenopus tropicalis


Alignment Length:409 Identity:168/409 - (41%)
Similarity:228/409 - (55%) Gaps:70/409 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 DYIKEEQRNLKKEF-----IHAQEE--------------VKRIKAVPLVIGQFLEAVDENNGIVA 91
            ||:..:||..|:|.     |.:.:|              .::||.|...|.|.|:.::|..||..
 Frog     3 DYLGADQRKTKEEEKEDKPIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKE 67

  Fly    92 STTG--------------------SNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVDL------- 129
            |.||                    .....|....|:.:...|...:.:.:.:..:|||       
 Frog    68 SDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPT 132

  Fly   130 --------------------VPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTH 174
                                :||:.|.|::|:..:||||::|||:||...|.:::||.||.||.|
 Frog   133 DIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLH 197

  Fly   175 AQLYKQIGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFR 239
            .:.:..:||:||:|||||||||.|||:.|:|||:.|.|.||||:|||.||||:|||.||||:||.
 Frog   198 PERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFE 262

  Fly   240 LAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTL 304
            :|:.....:||.||||||...|||...|.|.||||.:|||:||:||||...||||:|||||.|||
 Frog   263 MARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

  Fly   305 DPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIAR--PDKISNADINAICQ 367
            ||||:||||||||||..|||...:..:|......|:|..|:..| ::||  |:. :.|:|.::|.
 Frog   328 DPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE-LLARLCPNS-TGAEIRSVCT 390

  Fly   368 EAGMHAVRENRYVVNAKDF 386
            ||||.|:|..|.|...|||
 Frog   391 EAGMFAIRARRKVATEKDF 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 168/409 (41%)
psmc2NP_989155.1 PRK03992 44..430 CDD:179699 160/368 (43%)

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