DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3R and psmc2

DIOPT Version :10

Sequence 1:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_957260.1 Gene:psmc2 / 393941 ZFINID:ZDB-GENE-040426-1327 Length:433 Species:Danio rerio


Alignment Length:409 Identity:169/409 - (41%)
Similarity:229/409 - (55%) Gaps:70/409 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 DYIKEEQRNLKKEF-----IHAQEE--------------VKRIKAVPLVIGQFLEAVDENNGIVA 91
            ||:..|||.:|:|.     |.|.:|              .::||.|...|.|.|:.::|..||..
Zfish     3 DYLGTEQRKVKEEEKEDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKE 67

  Fly    92 STTG--------------------SNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVDL------- 129
            |.||                    .....|....|:.:...|...:.:.:.:..:|||       
Zfish    68 SDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPT 132

  Fly   130 --------------------VPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTH 174
                                :||:.|.|::|:..:||||::|||:||...|.:::||.||.||.|
Zfish   133 DIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLH 197

  Fly   175 AQLYKQIGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFR 239
            .:.:..:||:||:|||||||||.|||:.|:|||:.|.|.||||:|||.||||:|||.||||:||.
Zfish   198 PERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFE 262

  Fly   240 LAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTL 304
            :|:.....:||.||||||...|||...|.|.||||.:|||:||:||||...||||:|||||.|||
Zfish   263 MARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

  Fly   305 DPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIAR--PDKISNADINAICQ 367
            ||||:||||||||||..|||...:..:|......|:|..|:..| ::||  |:. :.|:|.::|.
Zfish   328 DPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE-LLARLCPNS-TGAEIRSVCT 390

  Fly   368 EAGMHAVRENRYVVNAKDF 386
            ||||.|:|..|.:...|||
Zfish   391 EAGMFAIRARRKIATEKDF 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 169/409 (41%)
psmc2NP_957260.1 PRK03992 44..430 CDD:179699 159/368 (43%)

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