DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3R and Psmc3

DIOPT Version :10

Sequence 1:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_113783.2 Gene:Psmc3 / 29677 RGDID:61905 Length:442 Species:Rattus norvegicus


Alignment Length:420 Identity:163/420 - (38%)
Similarity:251/420 - (59%) Gaps:31/420 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EEIAQFHEQSLEKYDGLDPHDLYVLYKKLQMELELIQVQEDYIKEEQRNLKKEFIHAQEEVKRIK 70
            ||:.:...:.:.:...|...::.::..::......:|..:|.|||.           .|::|..|
  Rat    34 EEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN-----------SEKIKVNK 87

  Fly    71 AVPLVIGQFLEAVD------ENNG--------------IVASTTGSNYYVRVLSTIDREQLKPSS 115
            .:|.::...:|.:|      |.:|              ::.::|...|::.|:..:|.|:|||..
  Rat    88 TLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 152

  Fly   116 SVGLHKQSNCLVDLVPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQ 180
            .||::|.|..:::.:|.|.||.:..:..||:|...||||||||.|.||:.||:.||:.|.:.::.
  Rat   153 LVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFEN 217

  Fly   181 IGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNS 245
            :||.||:|||::||||.|||:||:|.|..|.|:|:::.|.:.||.::|:|.::|||.|.|||:.:
  Rat   218 LGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 282

  Fly   246 PSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALLR 310
            ||||||||:|||.|||||::...||||||.:||||||:|||...|.:|||.||||.|.|||||||
  Rat   283 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLR 347

  Fly   311 PGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIARPDKISNADINAICQEAGMHAVR 375
            .||||||||.|:|:...:..:....:.||||..||:.|::....|..:.|...|:|.||||.|:|
  Rat   348 SGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 412

  Fly   376 ENRYVVNAKDFEKGYKTSVRKDEAQHEFYS 405
            .....:..:|:.:|......|.:|..::|:
  Rat   413 RGATELTHEDYMEGILEVQAKKKANLQYYA 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 160/404 (40%)
Psmc3NP_113783.2 PRK03992 42..435 CDD:179699 159/403 (39%)

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