DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3R and Psmc1

DIOPT Version :10

Sequence 1:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_476464.1 Gene:Psmc1 / 117263 RGDID:621097 Length:440 Species:Rattus norvegicus


Alignment Length:397 Identity:188/397 - (47%)
Similarity:282/397 - (71%) Gaps:32/397 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PHDLYVLYKKLQMELELIQVQ--EDYIKEEQRNLKKEFIHAQEEVK--------------RIKAV 72
            ||        .|..|:|::::  :||:..|:     |||..||::|              .::..
  Rat    54 PH--------TQCRLKLLKLERIKDYLLMEE-----EFIRNQEQMKPLEEKQEEERSKVDDLRGT 105

  Fly    73 PLVIGQFLEAVDENNGIVASTTGSNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVDLVPPEADST 137
            |:.:|...|.:|:|:.||:::.||.:||.:||.:|::.|:|..||.|:.:.:.::.::..:.|..
  Rat   106 PMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPL 170

  Fly   138 ISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKTML 202
            ::::..::.|..:|:||||||.|.|||:|:|||||||.:.|:::||.||:||:|:||||.|||:|
  Rat   171 VTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 235

  Fly   203 AKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTG 267
            |||||:.|:|:|:||||||.:|||||:||::||:|||:|::::|||:||||||||.|||:|:.:|
  Rat   236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 300

  Fly   268 ADREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALLRPGRLDRKIELPLPDRRQKRLVF 332
            .:||:||.:||||||:||||...::||||||||.:||||||:||||:|||||.||||.:.|:.:|
  Rat   301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIF 365

  Fly   333 TTITSKMNVGEDVDLEDIIARPDKISNADINAICQEAGMHAVRENRYVVNAKDFEKGYKTSV--R 395
            ...||:|.:.:||.|:|:|...|.:|.|||.|||.|||:.|:||.|..|..:||:|. |.:|  :
  Rat   366 QIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENVLYK 429

  Fly   396 KDEAQHE 402
            |.|...|
  Rat   430 KQEGTPE 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 188/397 (47%)
Psmc1NP_476464.1 PTZ00361 1..440 CDD:185575 188/397 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 1/19 (5%)
Blue background indicates that the domain is not in the aligned region.

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