DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VII and nectin3b

DIOPT Version :10

Sequence 1:NP_649933.1 Gene:side-VII / 41184 FlyBaseID:FBgn0037736 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_001014326.1 Gene:nectin3b / 541491 ZFINID:ZDB-GENE-050327-14 Length:574 Species:Danio rerio


Alignment Length:784 Identity:138/784 - (17%)
Similarity:229/784 - (29%) Gaps:317/784 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 INSRIRL------------NVISPPKQVIIRDSSNVERSTVVGPYSEGDIVSLKC--QVIGGYPT 176
            :|.|:.|            .||.|||.           :.|:|..     |:|.|  ||......
Zfish    19 LNVRVLLMLSFVSGLVYGSQVIVPPKV-----------NAVLGKN-----VTLSCRVQVDTNLSL 67

  Fly   177 PTISWYRD---------------GIEIPCELSH---LAGGKIIECEITLPSLGREDLNSRLTCRA 223
            ...||.|.               ||.||.:...   ......::..|.|..:|..|:.. .||:.
Zfish    68 TQSSWERKLPNGWVTLAVYNPMFGISIPPDYERRLSFRSPSALDATIMLEDVGFADIGV-YTCKV 131

  Fly   224 LSHPR---------APIVEAVVQIDMNFAPLNIRLLGAHQPLSAGRRYDLLCQSAGSRPPAVITW 279
            .:.|.         :.:||..|.:....:.|   :.|.::...|      .|.:..:||||.::|
Zfish   132 ATFPLGNTQASTTVSVLVEPKVYVSAGSSAL---IDGGNETTVA------TCIAERARPPADVSW 187

  Fly   280 WQNGIRLEKTTET-TSSDGNQTTSTLSISLSKSDAGKYLSCKAYNHAVPSEPLEDGWKLDIQYVP 343
            ..|   |...:|. ...|.|.||:|                                  .:.|: 
Zfish   188 ETN---LYGMSEAHMQEDANGTTTT----------------------------------QVHYI- 214

  Fly   344 EAYVRLGTSLDPSTLREGTDVYFDCLVMAHPNV---FRIEWRHNEQPLSHNISLGVIISNHSLVL 405
                     ..||...:|..:  .| |:.||.:   |||                          
Zfish   215 ---------WQPSRHAQGHTL--TC-VVKHPALQSDFRI-------------------------- 241

  Fly   406 QGVTRATAGNYSCVGFNAEGEGISAPFALNILYAPTCAQNQKKVYG-----IAKQEDAKVMCTVD 465
                                     |:.:|:.:||...     |.|     ...:|:.::.|...
Zfish   242 -------------------------PYIINVQFAPDIL-----VLGYDGDWYVGRENVQLKCRAK 276

  Fly   466 ANPREVEFSW-----TFNNSAESIDVATNHIIRSGTTSIVTYTPITELDYGTLLCLASNKIGKQR 525
            |||....|.|     ...|.||.::           .::|...|:.:.|.|...|..:|.||   
Zfish   277 ANPPAQHFRWIRLDGEMPNGAERVN-----------NTLVFTRPLQKNDSGVYRCEVANDIG--- 327

  Fly   526 VPCVFHIIAAGRPEKVHNCTVNNISMTSLTVTCSDGFNGGLPQSFNLELLDSYTQEIKANITSTI 590
                                                               .::::|:..|....
Zfish   328 ---------------------------------------------------LHSRDIRIRIQDPP 341

  Fly   591 PKFTVPGLSPGSIYRLNIYAFNTKGRSDPAIVNAAMLRMPEKQLTSEQTHNLRAELLFSPVMSLT 655
            ...|:|..:|..:...:|.| ...|....|::.:..|                     :|:...:
Zfish   342 STTTMPPTTPVRLLTADISA-TAPGNKQRALITSPTL---------------------APLHEGS 384

  Fly   656 IGLTLAVLVAVLAIILALRIPCTASSRRRQKELSNENISRDESPGPSD--KSSGSKEVDDCDEK- 717
            :|..:...|.....:|.|.|......:|:::....:..:: :..||||  |:....|:.....| 
Zfish   385 LGTIVGGAVGGALFLLLLLILAGVYYQRQRRTFRGDYYTK-QYHGPSDMQKAPQPHELQQVYSKG 448

  Fly   718 NPDVVPES------IEPDEQAESIRKRQQISTIDTNRSPN---RGI-------FVNEQQHLTAAE 766
            :||...:|      |.||      :.|::....|..||||   |.:       ..|.|.|    |
Zfish   449 SPDTKLKSNQDNGTIYPD------KDREEWGDFDRERSPNGRSRALREAGQLNHHNHQNH----E 503

  Fly   767 ISLRASHGIGYCTLRSGMHAQAQSSV---------GEISINVTPHV----YSNSISQCTLPRQSS 818
            ....::|..|:....|..|...:||:         .::..|.:|::    |.|.....|.....|
Zfish   504 HGFHSNHHTGHPHSYSPAHHIQRSSLQPQPRRYPAPQVMSNGSPYLPEDCYDNEYVSHTDGSMIS 568

  Fly   819 QNVW 822
            :..|
Zfish   569 RREW 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VIINP_649933.1 V-set 32..134 CDD:462230 3/19 (16%)
Ig_3 160..223 CDD:464046 18/82 (22%)
Ig 256..328 CDD:472250 15/72 (21%)
Ig strand B 262..266 CDD:409353 0/3 (0%)
Ig strand C 276..280 CDD:409353 0/3 (0%)
Ig strand E 302..306 CDD:409353 1/3 (33%)
Ig strand F 316..321 CDD:409353 0/4 (0%)
Ig 351..426 CDD:472250 10/77 (13%)
Ig strand B 364..368 CDD:409353 0/3 (0%)
Ig strand C 375..382 CDD:409353 3/9 (33%)
Ig strand E 401..405 CDD:409353 0/3 (0%)
Ig strand F 415..420 CDD:409353 0/4 (0%)
Ig_3 <456..519 CDD:464046 15/67 (22%)
FN3 538..620 CDD:238020 8/81 (10%)
nectin3bNP_001014326.1 Ig 37..148 CDD:472250 26/127 (20%)
Ig strand B 53..57 CDD:409470 2/3 (67%)
Ig strand C 69..73 CDD:409470 1/3 (33%)
Ig strand E 112..116 CDD:409470 1/3 (33%)
Ig strand F 126..131 CDD:409470 2/5 (40%)
Ig strand G 140..143 CDD:409470 0/2 (0%)
IgC1_2_Nectin-3-4_like 151..247 CDD:409501 30/205 (15%)
Ig strand A 151..157 CDD:409501 1/5 (20%)
Ig strand B 170..177 CDD:409501 2/12 (17%)
Ig strand C 182..188 CDD:409501 2/5 (40%)
Ig strand C' 190..192 CDD:409501 1/4 (25%)
Ig strand D 194..201 CDD:409501 1/6 (17%)
Ig strand E 207..215 CDD:409501 3/51 (6%)
Ig strand F 225..232 CDD:409501 2/9 (22%)
Ig strand G 238..244 CDD:409501 4/56 (7%)
IG_like 267..337 CDD:214653 19/134 (14%)
Ig strand B 269..273 CDD:409353 0/3 (0%)
Ig strand C 282..287 CDD:409353 1/4 (25%)
Ig strand E 302..306 CDD:409353 0/3 (0%)
Ig strand F 317..322 CDD:409353 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 442..484 13/47 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 498..549 12/54 (22%)

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