DRSC/TRiP Functional Genomics Resources

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Protein Alignment FoxP and Foxa1

DIOPT Version :10

Sequence 1:NP_001247011.1 Gene:FoxP / 41182 FlyBaseID:FBgn0262477 Length:520 Species:Drosophila melanogaster
Sequence 2:XP_038967720.1 Gene:Foxa1 / 25098 RGDID:2807 Length:475 Species:Rattus norvegicus


Alignment Length:246 Identity:75/246 - (30%)
Similarity:104/246 - (42%) Gaps:51/246 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   322 YKNADVRPPFTYASLIRQAIIDSPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAIRTNLSLHKCF 386
            |.:|  :||::|.|||..||..:|.|.|||:|||.|..:.|.|:|:|...|:|:||.:||.:.||
  Rat   166 YPHA--KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCF 228

  Fly   387 VRY-----EDDFGSFWMV---DDNEFVKRRHLSRGRPRKYE--PSSSPNSCQSGN-GVPTDK--- 437
            |:.     :...||:|.:   ..|.|....:|.|.:..|.|  |.:...|...|: |||.::   
  Rat   229 VKVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCEKQPGAGGGSGGGGSKGVPENRKDP 293

  Fly   438 ----NPCDNCTQH-----CTSLPPGADNPLDSNNPNDLGRIGCLPYCGSDGL-SKASKDYSNMDS 492
                ||......|     ..|...||..|..:.:|..|...|.....|:..| |.||.....:.|
  Rat   294 SGPVNPSAESPIHRGVHGKASQLEGAPAPGPAASPQTLDHSGATATGGASELKSPASSSAPPISS 358

  Fly   493 G-----------------MIESNSHLTID-EYS-------TNMYESSANEH 518
            |                 ..||..||..| .||       .|:..||..:|
  Rat   359 GPGALASVPPSHPAHGLAPHESQLHLKGDPHYSFNHPFSINNLMSSSEQQH 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FoxPNP_001247011.1 FOXP-CC 157..224 CDD:465036
FH_FOX 327..408 CDD:469596 35/88 (40%)
Foxa1XP_038967720.1 Forkhead_N 17..169 CDD:369872 1/2 (50%)
FH_FOXA1 157..268 CDD:410812 39/103 (38%)
HNF_C 393..457 CDD:430552 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.

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