DRSC/TRiP Functional Genomics Resources

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Protein Alignment hyd and PAB1

DIOPT Version :10

Sequence 1:NP_001287262.1 Gene:hyd / 41181 FlyBaseID:FBgn0002431 Length:2887 Species:Drosophila melanogaster
Sequence 2:NP_011092.1 Gene:PAB1 / 856912 SGDID:S000000967 Length:577 Species:Saccharomyces cerevisiae


Alignment Length:680 Identity:125/680 - (18%)
Similarity:223/680 - (32%) Gaps:212/680 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1997 TDDELANLEEFNADVQMSASSMPSGSQGTRRHAFFARSESTLSLGCSAPEGFELPLDMAMPLADK 2061
            ||.....||..|.......::..|.||...      .|.::|.:|           |:. |...:
Yeast     5 TDKTAEQLENLNIQDDQKQAATGSESQSVE------NSSASLYVG-----------DLE-PSVSE 51

  Fly  2062 PHLLQPNSKRQELFANLPLLVTTNANNSGAT-----------NDGDGG----SIFDYTPTRLGFS 2111
            .||       .::|:.:..:.:........|           ||.:.|    ...:|||.: |..
Yeast    52 AHL-------YDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIK-GRL 108

  Fly  2112 NSLKRNERVYETVPIDSS--KTGDGNVTNKAEGSTDSNIYVQLKKKQGSDDFK------SHKEA- 2167
            ..:..::|       |.|  |.|.||:..|       |::..:..|...|.|.      |.|.| 
Yeast   109 CRIMWSQR-------DPSLRKKGSGNIFIK-------NLHPDIDNKALYDTFSVFGDILSSKIAT 159

  Fly  2168 -DGNQSKYEKVVLMETDDSLPSTSKSTEALMATRPEVIIAPNKASVSPATAARSVIVLAGGSCLK 2231
             :..:||....|..|.:.:......:...::....|:.:||                        
Yeast   160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP------------------------ 200

  Fly  2232 TIDSDINNYSASNLSTAEQAKCDTQYQKSTSDHLLLFPAR-GSQFYQSNFSELPSWNFLLSRWKL 2295
                        :||..|:   |:|.:::.:.:..|:... .|:.....|.||            
Yeast   201 ------------HLSRKER---DSQLEETKAHYTNLYVKNINSETTDEQFQEL------------ 238

  Fly  2296 TLDLFGRVFMDDVGMEHGSVLPELRGFPVKEMRFRRHMEKLR----------NGQ---------- 2340
             ...||.:....:..:...   :|:||..  :.:.:|.:.::          ||:          
Yeast   239 -FAKFGPIVSASLEKDADG---KLKGFGF--VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297

  Fly  2341 -QRDLVLCK------LERNRESLIVQTF-KELNTQFGNQ--SRRIQPPITFNRVKVTFKDEPGEG 2395
             :|..||.|      ||:..:...|..| |.|:....::  .....|..|....|| .:.|.|:.
Yeast   298 NERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKS 361

  Fly  2396 SGVARSFYTSIAEALLASAKIPNLESVQVGTNHSKYVVPFSSILRSRTVSGSSRDQSTLQRRGSN 2460
            .|.....:::..||..|..:    ::.|:......||    :|.:.:.|..|...|. :|.|...
Yeast   362 KGFGFVCFSTPEEATKAITE----KNQQIVAGKPLYV----AIAQRKDVRRSQLAQQ-IQARNQM 417

  Fly  2461 SKILWRSARERKALNLDAR---------------PYTPPNSS----------------------- 2487
            ......:|....|..:..:               |:..||..                       
Yeast   418 RYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNGPVY 482

  Fly  2488 ----DNATPESLNDHLSVHLQQ----IGERLYPKI--HSINQTHAPKITGMLLEIPTPQLLSVIS 2542
                ....|.:.||:...:.|:    :||:||.|:  .:.|:..|.|||||:|::|..::..::.
Yeast   483 GVPPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLE 547

  Fly  2543 SDETLRQKVNEAIEII-TFKQKSETSAQSS 2571
            |||...|...||.... :||::.|...:.:
Yeast   548 SDELFEQHYKEASAAYESFKKEQEQQTEQA 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hydNP_001287262.1 UBA_like_SF 150..196 CDD:473871
UBR-box_UBR5 1211..1286 CDD:439073
MDN1 <1551..>1724 CDD:444083
PolyA 2498..2561 CDD:197769 21/69 (30%)
HECTc 2589..2884 CDD:214523
PAB1NP_011092.1 PABP-1234 38..559 CDD:130689 111/621 (18%)
Blue background indicates that the domain is not in the aligned region.

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