Protein Alignment hyd and Herc4

DIOPT Version :10

• Sequence 1: NP_001287262.1
• Gene: hyd / 41181
• FlyBaseID: FBgn0002431
• Length: 2887
• Species: Drosophila melanogaster
• Sequence 2: NP_001261249.1
• Gene: Herc4 / 38151
• FlyBaseID: FBgn0035207
• Length: 1062
• Species: Drosophila melanogaster
• Alignment Length: 282
• Identity: 80/282 - (28%)
• Similarity: 130/282 - (46%)
• Gaps: 17/282 - (6%)

  Fly  2610 SFERINAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILGRKIKFHDLAFFDPALYESFRQIIQNA 2674
            :||..|.:..||.|.||.:....::.|.....:.|.:||:.:...||....|....|.:.::.
  Fly   794 TFETENMYFLIGVLCGLAIYNFTIINLPFPLALFKKLLGKPVDLSDLRQLSPPEANSMQSLLD-- 856

  Fly  2675 QTKEGEETINRMELCFVI--DLMKEEGCGNRELIPGGRDVAVTSSNIFEYVRRYTEYRLIKSQEK 2737
              .:|::.....:|.|.|  |:..|  ...:.|.|.|.::|||..|..|:|..|.::...||.|.
  Fly   857 --YQGDDFKEVFDLTFEISRDVFGE--AETKCLKPNGNEIAVTLENRQEFVDLYVDFVFNKSVEL 917

  Fly  2738 ALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPDKLLKFKKWF 2802
            ...|...|...|.....:.....|:|..::.|..|.:...|..    |.|..||...:....|||
  Fly   918 HYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNEDYDWQALQD----NCEYREGYTSVDDTIKWF 978

  Fly  2803 WSIVEKMNIMERQDLVYFWTGSPALPASEEGFQPLPSVTIRPA-DDSHLPTANTCISRLYIPLYS 2866
            |.::..|:..|::..:.|.|||..:|.  :|.:.| .:||:|. |:..||.|:||.:.|.:|.|.
  Fly   979 WEVIHDMSEAEKKSFLLFLTGSDRIPI--QGMKAL-KLTIQPTPDERFLPVAHTCFNLLDLPRYK 1040

  Fly  2867 SKSILRSKMLMAI-KSKNFGFV 2887
            :|..|:.|:|.|| :::.|..|
  Fly  1041 TKERLKYKLLQAIQQTQGFSLV 1062

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
hyd	NP_001287262.1	UBA_like_SF	150..196	CDD:473871
		UBR-box_UBR5	1211..1286	CDD:439073
		MDN1	<1551..>1724	CDD:444083
		PolyA	2498..2561	CDD:197769
		HECTc	2589..2884	CDD:214523	78/277 (28%)
Herc4	NP_001261249.1	ATS1	7..352	CDD:444065
		RCC1	327..390	CDD:395335
		HECTc	715..1060	CDD:238033	78/278 (28%)